SNP Detail Info-rs9877517

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0218 (6528/29910,GnomAD)
G==0183 (5349/29118,TOPMED)
G==0149 (746/5008,1000G)
G==0293 (1131/3854,ALSPAC)
G==0311 (1155/3708,TWINSUK)

Position: chr3:29246160 (GRCh38.p7) (3p24.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 11 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.29246160G>A
GRCh37.p13 chr 3	NC_000003.11:g.29287651G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.039	A=0.961
1000Genomes	American	Sub	694	G=0.200	A=0.800
1000Genomes	East Asian	Sub	1008	G=0.049	A=0.951
1000Genomes	Europe	Sub	1006	G=0.309	A=0.691
1000Genomes	Global	Study-wide	5008	G=0.149	A=0.851
1000Genomes	South Asian	Sub	978	G=0.200	A=0.800
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.293	A=0.707
The Genome Aggregation Database	African	Sub	8724	G=0.069	A=0.931
The Genome Aggregation Database	American	Sub	838	G=0.220	A=0.780
The Genome Aggregation Database	East Asian	Sub	1620	G=0.050	A=0.950
The Genome Aggregation Database	Europe	Sub	18426	G=0.302	A=0.697
The Genome Aggregation Database	Global	Study-wide	29910	G=0.218	A=0.781
The Genome Aggregation Database	Other	Sub	302	G=0.280	A=0.720
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.183	A=0.816
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.311	A=0.689

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9877517	0.0000653	alcoholism	pha002891
rs9877517	0.0000653	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	29320605	29320688	E068	32954
chr3	29320712	29321067	E068	33061
chr3	29277724	29277996	E071	-9655
chr3	29320605	29320688	E073	32954
chr3	29320712	29321067	E073	33061
chr3	29320712	29321067	E074	33061

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr3	29321251	29325625	E067	33600
chr3	29321251	29325625	E068	33600
chr3	29321251	29325625	E069	33600
chr3	29321251	29325625	E070	33600
chr3	29321251	29325625	E071	33600
chr3	29325664	29325824	E071	38013
chr3	29326810	29328368	E071	39159
chr3	29321251	29325625	E072	33600
chr3	29321251	29325625	E073	33600
chr3	29321251	29325625	E074	33600
chr3	29321251	29325625	E081	33600

rs9877517