rs9879040

Homo sapiens
A>G / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
G=0202 (6051/29866,GnomAD)
G=0261 (7616/29118,TOPMED)
G=0232 (1161/5008,1000G)
chr3:42230626 (GRCh38.p7) (3p22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
112 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.42230626A>G
GRCh38.p7 chr 3NC_000003.12:g.42230626A>T
GRCh37.p13 chr 3NC_000003.11:g.42272118A>G
GRCh37.p13 chr 3NC_000003.11:g.42272118A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.396G=0.604
1000GenomesAmericanSub694A=0.870G=0.130
1000GenomesEast AsianSub1008A=0.890G=0.110
1000GenomesEuropeSub1006A=0.920G=0.080
1000GenomesGlobalStudy-wide5008A=0.768G=0.232
1000GenomesSouth AsianSub978A=0.920G=0.080
The Genome Aggregation DatabaseAfricanSub8652A=0.503G=0.497
The Genome Aggregation DatabaseAmericanSub836A=0.870G=0.13,
The Genome Aggregation DatabaseEast AsianSub1616A=0.905G=0.095
The Genome Aggregation DatabaseEuropeSub18460A=0.920G=0.079
The Genome Aggregation DatabaseGlobalStudy-wide29866A=0.797G=0.202
The Genome Aggregation DatabaseOtherSub302A=0.900G=0.10,
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.738G=0.261
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs98790400.000224alcohol consumption (maxi-drinks)24277619

eQTL of rs9879040 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9879040 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr31429033614290976E067-12085
chr31429118614291468E067-11593
chr31429755514297678E067-5383
chr31429773114297802E067-5259
chr31429792914298109E067-4952
chr31429812614298373E067-4688
chr31433994414340182E06736883
chr31434022114340265E06737160
chr31434039414340488E06737333
chr31425327014253360E068-49701
chr31429033614290976E068-12085
chr31429118614291468E068-11593
chr31429755514297678E068-5383
chr31429773114297802E068-5259
chr31429792914298109E068-4952
chr31429812614298373E068-4688
chr31430261814303140E0680
chr31433008314330137E06827022
chr31433892114339023E06835860
chr31433912014339228E06836059
chr31433930614339750E06836245
chr31433994414340182E06836883
chr31434207414342315E06839013
chr31425327014253360E069-49701
chr31425342414253509E069-49552
chr31429033614290976E069-12085
chr31429118614291468E069-11593
chr31429755514297678E069-5383
chr31429773114297802E069-5259
chr31429792914298109E069-4952
chr31429812614298373E069-4688
chr31430261814303140E0690
chr31433078714331008E06927726
chr31433104014331610E06927979
chr31433892114339023E06935860
chr31433912014339228E06936059
chr31429755514297678E070-5383
chr31429773114297802E070-5259
chr31429792914298109E070-4952
chr31429812614298373E070-4688
chr31433892114339023E07035860
chr31433912014339228E07036059
chr31433930614339750E07036245
chr31433994414340182E07036883
chr31425327014253360E071-49701
chr31425342414253509E071-49552
chr31429033614290976E071-12085
chr31429118614291468E071-11593
chr31429755514297678E071-5383
chr31429773114297802E071-5259
chr31429792914298109E071-4952
chr31429812614298373E071-4688
chr31430261814303140E0710
chr31433892114339023E07135860
chr31433912014339228E07136059
chr31433994414340182E07136883
chr31425327014253360E072-49701
chr31425342414253509E072-49552
chr31429033614290976E072-12085
chr31429118614291468E072-11593
chr31429755514297678E072-5383
chr31429773114297802E072-5259
chr31429792914298109E072-4952
chr31429812614298373E072-4688
chr31430261814303140E0720
chr31433078714331008E07227726
chr31433104014331610E07227979
chr31433892114339023E07235860
chr31433912014339228E07236059
chr31434254314342827E07239482
chr31434284114342930E07239780
chr31429033614290976E073-12085
chr31429118614291468E073-11593
chr31429755514297678E073-5383
chr31429773114297802E073-5259
chr31429792914298109E073-4952
chr31429812614298373E073-4688
chr31430261814303140E0730
chr31433994414340182E07336883
chr31425327014253360E074-49701
chr31425342414253509E074-49552
chr31428908214289161E074-13900
chr31429033614290976E074-12085
chr31429118614291468E074-11593
chr31429755514297678E074-5383
chr31429773114297802E074-5259
chr31429792914298109E074-4952
chr31429812614298373E074-4688
chr31430261814303140E0740
chr31433892114339023E07435860
chr31433912014339228E07436059
chr31433930614339750E07436245
chr31433994414340182E07436883
chr31432072614320880E08117665
chr31432105714321299E08117996
chr31432639114326454E08123330
chr31432678614326904E08123725
chr31432708514327353E08124024
chr31433892114339023E08135860
chr31433912014339228E08136059
chr31433930614339750E08136245
chr31433994414340182E08136883
chr31434022114340265E08137160
chr31434039414340488E08137333
chr31432678614326904E08223725
chr31432708514327353E08224024
chr31433892114339023E08235860
chr31433912014339228E08236059
chr31433994414340182E08236883
chr31434587714345943E08242816
chr31434603114346146E08242970
chr31434629014346575E08243229










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr31425768814258608E067-44453
chr31425768814258608E068-44453
chr31425768814258608E069-44453
chr31425768814258608E070-44453
chr31425768814258608E071-44453
chr31425768814258608E072-44453
chr31425768814258608E073-44453
chr31425768814258608E074-44453
chr31425768814258608E081-44453
chr31425768814258608E082-44453