rs9879548

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0200 (5990/29868,GnomAD)
T=0274 (7988/29118,TOPMED)
T=0209 (1049/5008,1000G)
T=0104 (399/3854,ALSPAC)
T=0107 (398/3708,TWINSUK)
chr3:164869514 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164869514G>T
GRCh37.p13 chr 3NC_000003.11:g.164587302G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.500T=0.500
1000GenomesAmericanSub694G=0.900T=0.100
1000GenomesEast AsianSub1008G=0.902T=0.098
1000GenomesEuropeSub1006G=0.906T=0.094
1000GenomesGlobalStudy-wide5008G=0.791T=0.209
1000GenomesSouth AsianSub978G=0.870T=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.896T=0.104
The Genome Aggregation DatabaseAfricanSub8688G=0.529T=0.471
The Genome Aggregation DatabaseAmericanSub828G=0.920T=0.080
The Genome Aggregation DatabaseEast AsianSub1620G=0.892T=0.108
The Genome Aggregation DatabaseEuropeSub18430G=0.911T=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29868G=0.799T=0.200
The Genome Aggregation DatabaseOtherSub302G=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.725T=0.274
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.893T=0.107
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98795484.99E-09alcohol dependence (age at onset)24962325

eQTL of rs9879548 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9879548 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.