SNP Detail Info-rs9880338

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0195 (5854/29902,GnomAD)
A=0268 (7819/29118,TOPMED)
A=0214 (1070/5008,1000G)
A=0104 (401/3854,ALSPAC)
A=0108 (399/3708,TWINSUK)

Position: chr3:164839864 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164839864G>A
GRCh37.p13 chr 3	NC_000003.11:g.164557652G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.486	A=0.514
1000Genomes	American	Sub	694	G=0.900	A=0.100
1000Genomes	East Asian	Sub	1008	G=0.902	A=0.098
1000Genomes	Europe	Sub	1006	G=0.907	A=0.093
1000Genomes	Global	Study-wide	5008	G=0.786	A=0.214
1000Genomes	South Asian	Sub	978	G=0.870	A=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8686	G=0.545	A=0.455
The Genome Aggregation Database	American	Sub	832	G=0.930	A=0.070
The Genome Aggregation Database	East Asian	Sub	1606	G=0.892	A=0.108
The Genome Aggregation Database	Europe	Sub	18476	G=0.911	A=0.088
The Genome Aggregation Database	Global	Study-wide	29902	G=0.804	A=0.195
The Genome Aggregation Database	Other	Sub	302	G=0.910	A=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.731	A=0.268
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.892	A=0.108

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs9880338	2.07E-08	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9880338