| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.110242347A>G |
| GRCh37.p13 chr 3 | NC_000003.11:g.109961194A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.677 | G=0.323 |
| 1000Genomes | American | Sub | 694 | A=0.860 | G=0.140 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.753 | G=0.247 |
| 1000Genomes | Europe | Sub | 1006 | A=0.904 | G=0.096 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.805 | G=0.195 |
| 1000Genomes | South Asian | Sub | 978 | A=0.890 | G=0.110 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.899 | G=0.101 |
| The Genome Aggregation Database | African | Sub | 8706 | A=0.705 | G=0.295 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.860 | G=0.140 |
| The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.745 | G=0.255 |
| The Genome Aggregation Database | Europe | Sub | 18492 | A=0.902 | G=0.097 |
| The Genome Aggregation Database | Global | Study-wide | 29952 | A=0.835 | G=0.164 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.920 | G=0.080 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.816 | G=0.183 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.894 | G=0.106 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21302341 | Replicated genome wide association for dependence on illegal substances: genomic regions identified by overlapping clusters of nominally positive SNPs. | Drgon T | Am J Med Genet B Neuropsychiatr Genet |
| 24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs9883805 | 0.000281 | alcohol consumption (maxi-drinks) | 24277619 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 109917656 | 109917744 | E070 | -43450 |
| chr3 | 110001899 | 110002049 | E070 | 40705 |
| chr3 | 109955692 | 109956302 | E081 | -4892 |
| chr3 | 110001899 | 110002049 | E081 | 40705 |
| chr3 | 109955692 | 109956302 | E082 | -4892 |
| chr3 | 110002429 | 110002610 | E082 | 41235 |