rs9890811

Homo sapiens
A>G
MSI2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0154 (4630/29920,GnomAD)
G=0208 (6073/29118,TOPMED)
G=0202 (1011/5008,1000G)
G=0037 (141/3854,ALSPAC)
G=0035 (131/3708,TWINSUK)
chr17:57335100 (GRCh38.p7) (17q22)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.57335100A>G
GRCh37.p13 chr 17NC_000017.10:g.55412461A>G

Gene: MSI2, musashi RNA binding protein 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
MSI2 transcript variant 3NM_001322250.1:c.N/AIntron Variant
MSI2 transcript variant 4NM_001322251.1:c.N/AIntron Variant
MSI2 transcript variant 1NM_138962.3:c.N/AIntron Variant
MSI2 transcript variant 2NM_170721.1:c.N/AIntron Variant
MSI2 transcript variant X1XM_005257014.3:c.N/AIntron Variant
MSI2 transcript variant X2XM_005257015.3:c.N/AIntron Variant
MSI2 transcript variant X6XM_011524286.1:c.N/AIntron Variant
MSI2 transcript variant X3XM_017024147.1:c.N/AIntron Variant
MSI2 transcript variant X4XM_017024148.1:c.N/AIntron Variant
MSI2 transcript variant X5XM_017024149.1:c.N/AIntron Variant
MSI2 transcript variant X7XM_011524287.2:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.555G=0.445
1000GenomesAmericanSub694A=0.790G=0.210
1000GenomesEast AsianSub1008A=0.812G=0.188
1000GenomesEuropeSub1006A=0.958G=0.042
1000GenomesGlobalStudy-wide5008A=0.798G=0.202
1000GenomesSouth AsianSub978A=0.960G=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.963G=0.037
The Genome Aggregation DatabaseAfricanSub8702A=0.609G=0.391
The Genome Aggregation DatabaseAmericanSub838A=0.790G=0.210
The Genome Aggregation DatabaseEast AsianSub1620A=0.830G=0.170
The Genome Aggregation DatabaseEuropeSub18458A=0.958G=0.041
The Genome Aggregation DatabaseGlobalStudy-wide29920A=0.845G=0.154
The Genome Aggregation DatabaseOtherSub302A=0.950G=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.791G=0.208
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.965G=0.035
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs98908111.83E-05alcohol and nictotine co-dependence20158304

eQTL of rs9890811 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9890811 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr175536488955365294E067-47167
chr175536532655366184E067-46277
chr175536621555366389E067-46072
chr175536639555366564E067-45897
chr175537135055371405E067-41056
chr175537149655371637E067-40824
chr175537164755371794E067-40667
chr175537194255372268E067-40193
chr175537230855372365E067-40096
chr175537240555372889E067-39572
chr175538971855390006E067-22455
chr175539051655391238E067-21223
chr175539759155397740E067-14721
chr175539780155397939E067-14522
chr175539795955398178E067-14283
chr175540615655406879E067-5582
chr175541832655418421E0675865
chr175541873055418810E0676269
chr175541885455418984E0676393
chr175541913155419228E0676670
chr175541930955419557E0676848
chr175541956455419850E0677103
chr175544124055441347E06728779
chr175544135055441404E06728889
chr175544147055441607E06729009
chr175544162055441664E06729159
chr175544169455441887E06729233
chr175544194055441990E06729479
chr175544279055442934E06730329
chr175544294755443109E06730486
chr175544317955443219E06730718
chr175536371555364177E068-48284
chr175536419355364352E068-48109
chr175536457055364776E068-47685
chr175536488955365294E068-47167
chr175536532655366184E068-46277
chr175536621555366389E068-46072
chr175536639555366564E068-45897
chr175536660955366800E068-45661
chr175536682755366990E068-45471
chr175536711755367465E068-44996
chr175536806655368140E068-44321
chr175536814255368191E068-44270
chr175537135055371405E068-41056
chr175537149655371637E068-40824
chr175537164755371794E068-40667
chr175537194255372268E068-40193
chr175537230855372365E068-40096
chr175537240555372889E068-39572
chr175537874855378798E068-33663
chr175537894055379012E068-33449
chr175537945555379565E068-32896
chr175537991555380028E068-32433
chr175538599955386039E068-26422
chr175538613055386174E068-26287
chr175538632255386420E068-26041
chr175538669355386746E068-25715
chr175538681955386877E068-25584
chr175538690055387196E068-25265
chr175539051655391238E068-21223
chr175540360955403702E068-8759
chr175540373355404159E068-8302
chr175540430755404439E068-8022
chr175540615655406879E068-5582
chr175540700655407614E068-4847
chr175541418855414238E0681727
chr175541461655414656E0682155
chr175541483855415090E0682377
chr175541533755415529E0682876
chr175541581255416410E0683351
chr175541650755416583E0684046
chr175541663755416801E0684176
chr175541682255416862E0684361
chr175541701155417080E0684550
chr175541747155417515E0685010
chr175541787255418017E0685411
chr175541808455418128E0685623
chr175541815755418207E0685696
chr175541823155418287E0685770
chr175541832655418421E0685865
chr175541873055418810E0686269
chr175541885455418984E0686393
chr175541913155419228E0686670
chr175541930955419557E0686848
chr175541956455419850E0687103
chr175542047955420671E0688018
chr175542099455421083E0688533
chr175542122755421298E0688766
chr175542136755421417E0688906
chr175542675555426878E06814294
chr175542701455427145E06814553
chr175542718755427290E06814726
chr175542730855427460E06814847
chr175542760155427963E06815140
chr175542806655428186E06815605
chr175543210255432313E06819641
chr175543237255432430E06819911
chr175543247455433310E06820013
chr175543339955433439E06820938
chr175543355155435819E06821090
chr175544124055441347E06828779
chr175544135055441404E06828889
chr175544147055441607E06829009
chr175544162055441664E06829159
chr175544169455441887E06829233
chr175544194055441990E06829479
chr175544215155442768E06829690
chr175544279055442934E06830329
chr175544294755443109E06830486
chr175544317955443219E06830718
chr175544330655443400E06830845
chr175544346855443604E06831007
chr175544367355444635E06831212
chr175544464255444933E06832181
chr175544627955448280E06833818
chr175545220955452265E06839748
chr175545239155452431E06839930
chr175545246755452536E06840006
chr175545262155452981E06840160
chr175545299055453886E06840529
chr175545609455457775E06843633
chr175536353155363695E069-48766
chr175536371555364177E069-48284
chr175536488955365294E069-47167
chr175536532655366184E069-46277
chr175536621555366389E069-46072
chr175536639555366564E069-45897
chr175536660955366800E069-45661
chr175536682755366990E069-45471
chr175536711755367465E069-44996
chr175537149655371637E069-40824
chr175537164755371794E069-40667
chr175537194255372268E069-40193
chr175537230855372365E069-40096
chr175539051655391238E069-21223
chr175539847255398538E069-13923
chr175539859155398721E069-13740
chr175539993555400102E069-12359
chr175540012455400193E069-12268
chr175541663755416801E0694176
chr175541682255416862E0694361
chr175541701155417080E0694550
chr175541747155417515E0695010
chr175541787255418017E0695411
chr175541808455418128E0695623
chr175541815755418207E0695696
chr175541823155418287E0695770
chr175541832655418421E0695865
chr175541873055418810E0696269
chr175541885455418984E0696393
chr175541913155419228E0696670
chr175541930955419557E0696848
chr175541956455419850E0697103
chr175542047955420671E0698018
chr175543037855430538E06917917
chr175543058055430651E06918119
chr175543070355430753E06918242
chr175543091755430970E06918456
chr175543098355431033E06918522
chr175543104455431094E06918583
chr175543156655431649E06919105
chr175543247455433310E06920013
chr175543339955433439E06920938
chr175543355155435819E06921090
chr175543968355439935E06927222
chr175544012055440164E06927659
chr175544124055441347E06928779
chr175544135055441404E06928889
chr175544147055441607E06929009
chr175544162055441664E06929159
chr175544169455441887E06929233
chr175544194055441990E06929479
chr175544215155442768E06929690
chr175544279055442934E06930329
chr175544294755443109E06930486
chr175544317955443219E06930718
chr175544330655443400E06930845
chr175544346855443604E06931007
chr175544367355444635E06931212
chr175544464255444933E06932181
chr175544507555445187E06932614
chr175544525155445345E06932790
chr175536353155363695E070-48766
chr175536419355364352E070-48109
chr175536457055364776E070-47685
chr175536488955365294E070-47167
chr175536532655366184E070-46277
chr175536621555366389E070-46072
chr175536639555366564E070-45897
chr175536660955366800E070-45661
chr175536682755366990E070-45471
chr175536711755367465E070-44996
chr175536780655367850E070-44611
chr175536806655368140E070-44321
chr175536814255368191E070-44270
chr175536843655368767E070-43694
chr175536896855369124E070-43337
chr175536929855369561E070-42900
chr175536956655369739E070-42722
chr175536992355370915E070-41546
chr175537135055371405E070-41056
chr175537240555372889E070-39572
chr175537289655373495E070-38966
chr175537354055373951E070-38510
chr175537874855378798E070-33663
chr175537894055379012E070-33449
chr175537945555379565E070-32896
chr175537991555380028E070-32433
chr175538010455380154E070-32307
chr175538038955380764E070-31697
chr175538086155380905E070-31556
chr175538097555381025E070-31436
chr175538110655381264E070-31197
chr175538251155382669E070-29792
chr175538283355382969E070-29492
chr175538298555383166E070-29295
chr175538579655385964E070-26497
chr175538599955386039E070-26422
chr175538613055386174E070-26287
chr175538632255386420E070-26041
chr175538669355386746E070-25715
chr175538681955386877E070-25584
chr175538690055387196E070-25265
chr175538729555387543E070-24918
chr175538878355388870E070-23591
chr175538917255389516E070-22945
chr175538962355389673E070-22788
chr175538971855390006E070-22455
chr175539051655391238E070-21223
chr175539144455391490E070-20971
chr175539189055391934E070-20527
chr175539226855392396E070-20065
chr175539253655392788E070-19673
chr175539291955393195E070-19266
chr175539321855393311E070-19150
chr175539347555393525E070-18936
chr175539575555395825E070-16636
chr175539603855396092E070-16369
chr175539616955396254E070-16207
chr175539663155396681E070-15780
chr175539722355397480E070-14981
chr175539759155397740E070-14721
chr175541461655414656E0702155
chr175541483855415090E0702377
chr175541533755415529E0702876
chr175541701155417080E0704550
chr175541747155417515E0705010
chr175541787255418017E0705411
chr175541808455418128E0705623
chr175541815755418207E0705696
chr175541823155418287E0705770
chr175541832655418421E0705865
chr175541873055418810E0706269
chr175541885455418984E0706393
chr175541956455419850E0707103
chr175542047955420671E0708018
chr175542099455421083E0708533
chr175542760155427963E07015140
chr175543210255432313E07019641
chr175543237255432430E07019911
chr175543247455433310E07020013
chr175543355155435819E07021090
chr175543719655437250E07024735
chr175543731855437452E07024857
chr175543749955437543E07025038
chr175543754855437706E07025087
chr175543785955437950E07025398
chr175543825555438355E07025794
chr175544215155442768E07029690
chr175544279055442934E07030329
chr175544294755443109E07030486
chr175544317955443219E07030718
chr175544330655443400E07030845
chr175544346855443604E07031007
chr175544367355444635E07031212
chr175544464255444933E07032181
chr175544507555445187E07032614
chr175544525155445345E07032790
chr175544608455446134E07033623
chr175544616055446250E07033699
chr175544627955448280E07033818
chr175545609455457775E07043633
chr175545797055458074E07045509
chr175546202355462099E07049562
chr175546211155462161E07049650
chr175536353155363695E071-48766
chr175536371555364177E071-48284
chr175536419355364352E071-48109
chr175536457055364776E071-47685
chr175536488955365294E071-47167
chr175536532655366184E071-46277
chr175536660955366800E071-45661
chr175536682755366990E071-45471
chr175536711755367465E071-44996
chr175537135055371405E071-41056
chr175537149655371637E071-40824
chr175537164755371794E071-40667
chr175537194255372268E071-40193
chr175537230855372365E071-40096
chr175537240555372889E071-39572
chr175538283355382969E071-29492
chr175538599955386039E071-26422
chr175538613055386174E071-26287
chr175538632255386420E071-26041
chr175538669355386746E071-25715
chr175538681955386877E071-25584
chr175540430755404439E071-8022
chr175540457255404862E071-7599
chr175540486455405273E071-7188
chr175540551155405593E071-6868
chr175540590055406104E071-6357
chr175540615655406879E071-5582
chr175540700655407614E071-4847
chr175540993755410150E071-2311
chr175541461655414656E0712155
chr175541483855415090E0712377
chr175541581255416410E0713351
chr175541650755416583E0714046
chr175541663755416801E0714176
chr175541682255416862E0714361
chr175541787255418017E0715411
chr175541808455418128E0715623
chr175541815755418207E0715696
chr175541823155418287E0715770
chr175541832655418421E0715865
chr175541873055418810E0716269
chr175541885455418984E0716393
chr175541913155419228E0716670
chr175541930955419557E0716848
chr175541956455419850E0717103
chr175542730855427460E07114847
chr175542760155427963E07115140
chr175542806655428186E07115605
chr175543237255432430E07119911
chr175543247455433310E07120013
chr175543355155435819E07121090
chr175543731855437452E07124857
chr175543749955437543E07125038
chr175543754855437706E07125087
chr175543785955437950E07125398
chr175544124055441347E07128779
chr175544135055441404E07128889
chr175544147055441607E07129009
chr175544162055441664E07129159
chr175544169455441887E07129233
chr175544194055441990E07129479
chr175544215155442768E07129690
chr175544279055442934E07130329
chr175544294755443109E07130486
chr175544317955443219E07130718
chr175544330655443400E07130845
chr175544346855443604E07131007
chr175544367355444635E07131212
chr175544464255444933E07132181
chr175544507555445187E07132614
chr175544525155445345E07132790
chr175544608455446134E07133623
chr175544616055446250E07133699
chr175544627955448280E07133818
chr175545609455457775E07143633
chr175536353155363695E072-48766
chr175536371555364177E072-48284
chr175536419355364352E072-48109
chr175536457055364776E072-47685
chr175536488955365294E072-47167
chr175536532655366184E072-46277
chr175536621555366389E072-46072
chr175536639555366564E072-45897
chr175536660955366800E072-45661
chr175536682755366990E072-45471
chr175536711755367465E072-44996
chr175537149655371637E072-40824
chr175537164755371794E072-40667
chr175537194255372268E072-40193
chr175537230855372365E072-40096
chr175537240555372889E072-39572
chr175537874855378798E072-33663
chr175537894055379012E072-33449
chr175540457255404862E072-7599
chr175540486455405273E072-7188
chr175540551155405593E072-6868
chr175541787255418017E0725411
chr175541808455418128E0725623
chr175541815755418207E0725696
chr175541823155418287E0725770
chr175541832655418421E0725865
chr175541873055418810E0726269
chr175541885455418984E0726393
chr175541913155419228E0726670
chr175541930955419557E0726848
chr175543237255432430E07219911
chr175543247455433310E07220013
chr175543339955433439E07220938
chr175544279055442934E07230329
chr175544294755443109E07230486
chr175544367355444635E07231212
chr175545797055458074E07245509
chr175545813355458267E07245672
chr175536353155363695E073-48766
chr175536371555364177E073-48284
chr175536457055364776E073-47685
chr175536488955365294E073-47167
chr175536532655366184E073-46277
chr175536621555366389E073-46072
chr175536639555366564E073-45897
chr175536660955366800E073-45661
chr175536682755366990E073-45471
chr175537135055371405E073-41056
chr175537149655371637E073-40824
chr175537164755371794E073-40667
chr175537194255372268E073-40193
chr175537230855372365E073-40096
chr175537240555372889E073-39572
chr175538599955386039E073-26422
chr175538613055386174E073-26287
chr175538632255386420E073-26041
chr175538669355386746E073-25715
chr175538681955386877E073-25584
chr175538690055387196E073-25265
chr175540993755410150E073-2311
chr175541069855410760E073-1701
chr175541103755411077E073-1384
chr175541115855411208E073-1253
chr175541123655411286E073-1175
chr175541134855411473E073-988
chr175541461655414656E0732155
chr175541483855415090E0732377
chr175541873055418810E0736269
chr175541885455418984E0736393
chr175541913155419228E0736670
chr175541930955419557E0736848
chr175541956455419850E0737103
chr175542047955420671E0738018
chr175542099455421083E0738533
chr175542660355426710E07314142
chr175542675555426878E07314294
chr175542701455427145E07314553
chr175542718755427290E07314726
chr175542730855427460E07314847
chr175542760155427963E07315140
chr175542806655428186E07315605
chr175542944455429604E07316983
chr175542972455429778E07317263
chr175543210255432313E07319641
chr175543237255432430E07319911
chr175543247455433310E07320013
chr175543355155435819E07321090
chr175543731855437452E07324857
chr175543749955437543E07325038
chr175543754855437706E07325087
chr175544102355441104E07328562
chr175544124055441347E07328779
chr175544135055441404E07328889
chr175544147055441607E07329009
chr175544162055441664E07329159
chr175544169455441887E07329233
chr175544194055441990E07329479
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