SNP Detail Info-rs9909854

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

LOC105371809 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0011 (332/29948,GnomAD)
T=0017 (511/29118,TOPMED)
T=0014 (72/5008,1000G)

Position: chr17:48679529 (GRCh38.p7) (17q21.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 3 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 17	NC_000017.11:g.48679529C>T
GRCh37.p13 chr 17	NC_000017.10:g.46756891C>T

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105371809 transcript variant X5	XR_001752924.1:n.	N/A	Intron Variant
LOC105371809 transcript variant X8	XR_001752925.1:n.	N/A	Intron Variant
LOC105371809 transcript variant X1	XR_934812.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X2	XR_934813.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X4	XR_934814.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X3	XR_934815.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X6	XR_934817.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X9	XR_934819.2:n.	N/A	Intron Variant
LOC105371809 transcript variant X7	XR_934818.2:n.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.950	T=0.050
1000Genomes	American	Sub	694	C=0.990	T=0.010
1000Genomes	East Asian	Sub	1008	C=1.000	T=0.000
1000Genomes	Europe	Sub	1006	C=1.000	T=0.000
1000Genomes	Global	Study-wide	5008	C=0.986	T=0.014
1000Genomes	South Asian	Sub	978	C=1.000	T=0.000
The Genome Aggregation Database	African	Sub	8724	C=0.962	T=0.038
The Genome Aggregation Database	American	Sub	838	C=1.000	T=0.000
The Genome Aggregation Database	East Asian	Sub	1620	C=1.000	T=0.000
The Genome Aggregation Database	Europe	Sub	18466	C=0.999	T=0.000
The Genome Aggregation Database	Global	Study-wide	29948	C=0.988	T=0.011
The Genome Aggregation Database	Other	Sub	300	C=1.000	T=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.982	T=0.017

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9909854	0.000329	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr17	46724513	46725438	E068	-31453
chr17	46724513	46725438	E072	-31453
chr17	46724513	46725438	E074	-31453

rs9909854