rs9910565

Homo sapiens
A>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0284 (8532/29946,GnomAD)
T=0296 (8632/29118,TOPMED)
T=0191 (957/5008,1000G)
T=0358 (1381/3854,ALSPAC)
T=0354 (1314/3708,TWINSUK)
chr17:31758181 (GRCh38.p7) (17q11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
36 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.31758181A>T
GRCh37.p13 chr 17NC_000017.10:g.30085200A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.827T=0.173
1000GenomesAmericanSub694A=0.700T=0.300
1000GenomesEast AsianSub1008A=0.997T=0.003
1000GenomesEuropeSub1006A=0.656T=0.344
1000GenomesGlobalStudy-wide5008A=0.809T=0.191
1000GenomesSouth AsianSub978A=0.830T=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.642T=0.358
The Genome Aggregation DatabaseAfricanSub8718A=0.770T=0.230
The Genome Aggregation DatabaseAmericanSub838A=0.740T=0.260
The Genome Aggregation DatabaseEast AsianSub1618A=0.999T=0.001
The Genome Aggregation DatabaseEuropeSub18470A=0.663T=0.336
The Genome Aggregation DatabaseGlobalStudy-wide29946A=0.715T=0.284
The Genome Aggregation DatabaseOtherSub302A=0.680T=0.320
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.703T=0.296
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.646T=0.354
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs99105650.000789alcohol dependence21314694

eQTL of rs9910565 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9910565 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr173007082030071420E067-13780
chr173007143830072124E067-13076
chr173007082030071420E068-13780
chr173007082030071420E069-13780
chr173007143830072124E069-13076
chr173007303330073644E069-11556
chr173006561530065786E071-19414
chr173007082030071420E071-13780
chr173007143830072124E071-13076
chr173007303330073644E071-11556
chr173006561530065786E072-19414
chr173006585630065948E072-19252
chr173007082030071420E072-13780
chr173007143830072124E072-13076
chr173007082030071420E073-13780
chr173007143830072124E073-13076
chr173007082030071420E074-13780
chr173007143830072124E074-13076
chr173005955630059606E081-25594
chr173005967630059716E081-25484
chr173006049030060636E081-24564
chr173007082030071420E081-13780
chr173007143830072124E081-13076
chr173007262030072698E081-12502
chr173007275730072925E081-12275
chr173007303330073644E081-11556
chr173007370330073900E081-11300
chr173007393030074013E081-11187
chr173007424730074461E081-10739
chr173007446430074544E081-10656
chr173007654730076597E081-8603
chr173007672730076767E081-8433
chr173007678530076835E081-8365
chr173007143830072124E082-13076
chr173007303330073644E082-11556
chr173007370330073900E082-11300