rs9920308

Homo sapiens
C>A
GCOM1 : Intron Variant
MYZAP : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0403 (12068/29920,GnomAD)
A=0463 (2321/5008,1000G)
A=0387 (1490/3854,ALSPAC)
A=0379 (1405/3708,TWINSUK)
chr15:57610033 (GRCh38.p7) (15q21.3)
CD
GWASdb2
1   publication(s)
See rs on genome
39 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.57610033C>A
GRCh37.p13 chr 15NC_000015.9:g.57902231C>A

Gene: GCOM1, GRINL1A complex locus 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
GCOM1 transcript variant 1NM_001018090.6:c.N/AIntron Variant
GCOM1 transcript variant 2NM_001018091.6:c.N/AIntron Variant
GCOM1 transcript variant 14NM_001285900.3:c.N/AIntron Variant
GCOM1 transcript variant 10NR_104367.2:n.N/AIntron Variant
GCOM1 transcript variant 3NR_104368.2:n.N/AIntron Variant
GCOM1 transcript variant 4NR_104369.2:n.N/AIntron Variant
GCOM1 transcript variant 5NR_104370.2:n.N/AIntron Variant
GCOM1 transcript variant 9NR_104371.3:n.N/AIntron Variant

Gene: MYZAP, myocardial zonula adherens protein(plus strand)

Molecule type Change Amino acid[Codon] SO Term
MYZAP transcript variant 1NM_001018100.4:c.N/AIntron Variant
MYZAP transcript variant 2NM_152451.7:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.618A=0.382
1000GenomesAmericanSub694C=0.440A=0.560
1000GenomesEast AsianSub1008C=0.450A=0.550
1000GenomesEuropeSub1006C=0.604A=0.396
1000GenomesGlobalStudy-wide5008C=0.537A=0.463
1000GenomesSouth AsianSub978C=0.510A=0.490
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.613A=0.387
The Genome Aggregation DatabaseAfricanSub8696C=0.624A=0.376
The Genome Aggregation DatabaseAmericanSub838C=0.460A=0.540
The Genome Aggregation DatabaseEast AsianSub1614C=0.420A=0.580
The Genome Aggregation DatabaseEuropeSub18470C=0.606A=0.393
The Genome Aggregation DatabaseGlobalStudy-wide29920C=0.596A=0.403
The Genome Aggregation DatabaseOtherSub302C=0.560A=0.440
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.621A=0.379
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs99203080.00000351Cocaine induced paranoia23958962
rs99203080.00000497Cocaine induced paranoia, AA23958962

eQTL of rs9920308 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9920308 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr155791899557919271E06716764
chr155788099057881070E068-21161
chr155788118357881273E068-20958
chr155788134457881423E068-20808
chr155791899557919271E06816764
chr155789644757897249E069-4982
chr155793301257933062E06930781
chr155793309457933165E06930863
chr155794359757944076E06941366
chr155794425757944318E06942026
chr155791865757918798E07016426
chr155791899557919271E07016764
chr155792740157927490E07025170
chr155792757257928252E07025341
chr155788155357882255E071-19976
chr155788225657882367E071-19864
chr155789644757897249E071-4982
chr155794587757945927E07143646
chr155794359757944076E07241366
chr155794425757944318E07242026
chr155794521057945307E07242979
chr155789644757897249E073-4982
chr155785897757859508E074-42723
chr155788055857880944E074-21287
chr155788099057881070E074-21161
chr155788118357881273E074-20958
chr155788134457881423E074-20808
chr155791196257912302E0749731
chr155791232757912407E07410096
chr155791899557919271E07416764
chr155793432557934412E07432094
chr155793448657934545E07432255
chr155792757257928252E08125341
chr155792716557927209E08224934
chr155792725657927365E08225025
chr155792740157927490E08225170
chr155792757257928252E08225341
chr155792846857928518E08226237
chr155792874457928794E08226513










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr155788335657885099E067-17132
chr155788335657885099E068-17132
chr155788335657885099E069-17132
chr155788335657885099E071-17132
chr155788335657885099E072-17132
chr155788335657885099E073-17132
chr155788335657885099E074-17132
chr155788335657885099E082-17132