rs9923190

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0210 (6312/29944,GnomAD)
C==0191 (5585/29118,TOPMED)
C==0171 (858/5008,1000G)
C==0216 (834/3854,ALSPAC)
C==0221 (820/3708,TWINSUK)
chr16:86423027 (GRCh38.p7) (16q24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.86423027C>T
GRCh37.p13 chr 16NC_000016.9:g.86456633C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.147T=0.853
1000GenomesAmericanSub694C=0.180T=0.820
1000GenomesEast AsianSub1008C=0.172T=0.828
1000GenomesEuropeSub1006C=0.240T=0.760
1000GenomesGlobalStudy-wide5008C=0.171T=0.829
1000GenomesSouth AsianSub978C=0.130T=0.870
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.216T=0.784
The Genome Aggregation DatabaseAfricanSub8712C=0.146T=0.854
The Genome Aggregation DatabaseAmericanSub838C=0.210T=0.790
The Genome Aggregation DatabaseEast AsianSub1616C=0.150T=0.850
The Genome Aggregation DatabaseEuropeSub18476C=0.246T=0.753
The Genome Aggregation DatabaseGlobalStudy-wide29944C=0.210T=0.789
The Genome Aggregation DatabaseOtherSub302C=0.240T=0.760
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.191T=0.808
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.221T=0.779
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs99231900.000362alcohol dependence20201924

eQTL of rs9923190 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9923190 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr168649301486493105E06936381
chr168642969386431079E070-25554
chr168644308986443173E070-13460
chr168644329986443349E070-13284
chr168644335186443526E070-13107
chr168645972186459761E0703088
chr168645976886460085E0703135
chr168647815786478232E07021524
chr168647838986478484E07021756
chr168643187386432090E081-24543
chr168643212086432727E081-23906
chr168643277486432836E081-23797
chr168643285286433056E081-23577
chr168645755886457662E081925
chr168645802486458374E0811391
chr168645839186458729E0811758



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr168642792786428105E081-28528