Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 16 | NC_000016.10:g.82214277A>T |
GRCh37.p13 chr 16 | NC_000016.9:g.82247882A>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.207 | T=0.793 |
1000Genomes | American | Sub | 694 | A=0.530 | T=0.470 |
1000Genomes | East Asian | Sub | 1008 | A=0.596 | T=0.404 |
1000Genomes | Europe | Sub | 1006 | A=0.848 | T=0.152 |
1000Genomes | Global | Study-wide | 5008 | A=0.522 | T=0.478 |
1000Genomes | South Asian | Sub | 978 | A=0.530 | T=0.470 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.854 | T=0.146 |
The Genome Aggregation Database | African | Sub | 8684 | A=0.287 | T=0.713 |
The Genome Aggregation Database | American | Sub | 836 | A=0.490 | T=0.510 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.646 | T=0.354 |
The Genome Aggregation Database | Europe | Sub | 18456 | A=0.841 | T=0.158 |
The Genome Aggregation Database | Global | Study-wide | 29898 | A=0.659 | T=0.340 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.780 | T=0.220 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.576 | T=0.423 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.872 | T=0.128 |
PMID | Title | Author | Journal |
---|---|---|---|
23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9944350 | 1.72E-05 | alcohol consumption | 23743675 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr16 | 82202381 | 82202446 | E067 | -45436 |
chr16 | 82223529 | 82224363 | E068 | -23519 |
chr16 | 82281727 | 82281834 | E068 | 33845 |
chr16 | 82281945 | 82282010 | E068 | 34063 |
chr16 | 82282026 | 82282077 | E068 | 34144 |
chr16 | 82282281 | 82282335 | E068 | 34399 |
chr16 | 82282391 | 82282510 | E068 | 34509 |
chr16 | 82297040 | 82297136 | E069 | 49158 |
chr16 | 82202381 | 82202446 | E070 | -45436 |
chr16 | 82202381 | 82202446 | E071 | -45436 |
chr16 | 82204678 | 82204761 | E071 | -43121 |
chr16 | 82223529 | 82224363 | E071 | -23519 |
chr16 | 82297040 | 82297136 | E071 | 49158 |
chr16 | 82202381 | 82202446 | E072 | -45436 |
chr16 | 82202381 | 82202446 | E074 | -45436 |
chr16 | 82222817 | 82223046 | E074 | -24836 |
chr16 | 82223529 | 82224363 | E074 | -23519 |
chr16 | 82202381 | 82202446 | E081 | -45436 |
chr16 | 82204678 | 82204761 | E081 | -43121 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr16 | 82203209 | 82204552 | E067 | -43330 |
chr16 | 82203209 | 82204552 | E068 | -43330 |
chr16 | 82203209 | 82204552 | E069 | -43330 |
chr16 | 82203209 | 82204552 | E070 | -43330 |
chr16 | 82203209 | 82204552 | E071 | -43330 |
chr16 | 82203209 | 82204552 | E072 | -43330 |
chr16 | 82203209 | 82204552 | E073 | -43330 |
chr16 | 82203209 | 82204552 | E074 | -43330 |
chr16 | 82203209 | 82204552 | E081 | -43330 |
chr16 | 82203209 | 82204552 | E082 | -43330 |