rs9955902

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0225 (6761/29974,GnomAD)
G=0239 (6986/29118,TOPMED)
G=0264 (1320/5008,1000G)
G=0173 (667/3854,ALSPAC)
G=0175 (649/3708,TWINSUK)
chr18:13828445 (GRCh38.p7) (18p11.21)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
28 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.13828445T>G
GRCh37.p13 chr 18NC_000018.9:g.13828444T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.694G=0.306
1000GenomesAmericanSub694T=0.640G=0.360
1000GenomesEast AsianSub1008T=0.657G=0.343
1000GenomesEuropeSub1006T=0.827G=0.173
1000GenomesGlobalStudy-wide5008T=0.736G=0.264
1000GenomesSouth AsianSub978T=0.850G=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.827G=0.173
The Genome Aggregation DatabaseAfricanSub8718T=0.711G=0.289
The Genome Aggregation DatabaseAmericanSub836T=0.720G=0.280
The Genome Aggregation DatabaseEast AsianSub1620T=0.652G=0.348
The Genome Aggregation DatabaseEuropeSub18498T=0.816G=0.183
The Genome Aggregation DatabaseGlobalStudy-wide29974T=0.774G=0.225
The Genome Aggregation DatabaseOtherSub302T=0.820G=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.760G=0.239
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.825G=0.175
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs99559020.000955alcohol dependence20201924

eQTL of rs9955902 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9955902 in Fetal Brain

Probe ID Position Gene beta p-value
cg05409967chr18:13828548-0.03455461350089931.2428e-13

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr181381336213813710E072-14734
chr181381373113813808E072-14636
chr181387525413875328E07346810
chr181387184713872074E08143403
chr181383421613834276E0825772




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr181380070013801555E067-26889
chr181382362513824475E067-3969
chr181386840313869341E06739959
chr181380070013801555E068-26889
chr181382362513824475E068-3969
chr181386840313869341E06839959
chr181380070013801555E069-26889
chr181382362513824475E069-3969
chr181386840313869341E06939959
chr181386953913869595E06941095
chr181380070013801555E070-26889
chr181382362513824475E070-3969
chr181386840313869341E07039959
chr181386953913869595E07041095
chr181382362513824475E071-3969
chr181386840313869341E07139959
chr181380070013801555E072-26889
chr181382362513824475E072-3969
chr181386840313869341E07239959
chr181380070013801555E073-26889
chr181382362513824475E073-3969
chr181386840313869341E07339959
chr181380070013801555E074-26889
chr181382626613826406E074-2038
chr181386840313869341E07439959
chr181380070013801555E082-26889
chr181382362513824475E082-3969
chr181386840313869341E08239959