rs9960787

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0276 (8265/29886,GnomAD)
A=0249 (7261/29118,TOPMED)
A=0265 (1329/5008,1000G)
A=0285 (1099/3854,ALSPAC)
A=0288 (1069/3708,TWINSUK)
chr18:78577612 (GRCh38.p7) (18q23)
AD
GWASdb2
1   publication(s)
See rs on genome
59 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.78577612G>A
GRCh37.p13 chr 18NC_000018.9:g.76337612G>A
GRCh38.p7 chr 18 alt locus HSCHR18_ALT21_CTG2_1NT_187665.1:g.84146G>A
GRCh38.p7 chr 18 alt locus HSCHR18_1_CTG2_1NW_003315958.1:g.84146G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.781A=0.219
1000GenomesAmericanSub694G=0.660A=0.340
1000GenomesEast AsianSub1008G=0.776A=0.224
1000GenomesEuropeSub1006G=0.720A=0.280
1000GenomesGlobalStudy-wide5008G=0.735A=0.265
1000GenomesSouth AsianSub978G=0.700A=0.300
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.715A=0.285
The Genome Aggregation DatabaseAfricanSub8706G=0.783A=0.217
The Genome Aggregation DatabaseAmericanSub836G=0.720A=0.280
The Genome Aggregation DatabaseEast AsianSub1622G=0.789A=0.211
The Genome Aggregation DatabaseEuropeSub18420G=0.688A=0.311
The Genome Aggregation DatabaseGlobalStudy-wide29886G=0.723A=0.276
The Genome Aggregation DatabaseOtherSub302G=0.790A=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.750A=0.249
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.712A=0.288
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs99607870.000191alcohol dependence20201924

eQTL of rs9960787 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9960787 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr187630217276302807E068-34805
chr187632143476321659E068-15953
chr187630197876302132E069-35480
chr187630217276302807E069-34805
chr187632143476321659E069-15953
chr187628771176287916E070-49696
chr187628792076287989E070-49623
chr187628810776288328E070-49284
chr187628854876288716E070-48896
chr187628883176289170E070-48442
chr187632136976321427E070-16185
chr187632143476321659E070-15953
chr187632334876323398E070-14214
chr187634226676342698E0704654
chr187634270476342764E0705092
chr187634335976343498E0705747
chr187634362176343702E0706009
chr187634394276344188E0706330
chr187634430176344355E0706689
chr187634546676345516E0707854
chr187634643476346533E0708822
chr187634660476346979E0708992
chr187634710676347173E0709494
chr187634720976347279E0709597
chr187634766076347743E07010048
chr187634785676347951E07010244
chr187630197876302132E071-35480
chr187630217276302807E071-34805
chr187630317776303227E071-34385
chr187632136976321427E071-16185
chr187632143476321659E071-15953
chr187632136976321427E072-16185
chr187632143476321659E072-15953
chr187630197876302132E073-35480
chr187630217276302807E073-34805
chr187632143476321659E073-15953
chr187630197876302132E074-35480
chr187630217276302807E074-34805
chr187632143476321659E074-15953
chr187630197876302132E081-35480
chr187632136976321427E081-16185
chr187632143476321659E081-15953
chr187632334876323398E081-14214
chr187634226676342698E0814654
chr187634270476342764E0815092
chr187634335976343498E0815747
chr187634362176343702E0816009
chr187634394276344188E0816330
chr187634430176344355E0816689
chr187634546676345516E0817854
chr187634643476346533E0818822
chr187634660476346979E0818992
chr187634710676347173E0819494
chr187634820676348655E08110594
chr187634882876348868E08111216
chr187636691476366976E08129302
chr187628854876288716E082-48896
chr187632143476321659E082-15953
chr187634643476346533E0828822









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr187632202576322831E068-14781
chr187632202576322831E069-14781
chr187632202576322831E070-14781
chr187632202576322831E071-14781
chr187632202576322831E072-14781
chr187632202576322831E073-14781
chr187632202576322831E074-14781
chr187632202576322831E082-14781