| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 11 | NC_000011.10:g.80106208A>G |
| GRCh37.p13 chr 11 | NC_000011.9:g.79817252A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.598 | G=0.402 |
| 1000Genomes | American | Sub | 694 | A=0.760 | G=0.240 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.537 | G=0.463 |
| 1000Genomes | Europe | Sub | 1006 | A=0.821 | G=0.179 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.682 | G=0.318 |
| 1000Genomes | South Asian | Sub | 978 | A=0.750 | G=0.250 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.814 | G=0.186 |
| The Genome Aggregation Database | African | Sub | 8714 | A=0.632 | G=0.368 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.810 | G=0.190 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.514 | G=0.486 |
| The Genome Aggregation Database | Europe | Sub | 18480 | A=0.806 | G=0.193 |
| The Genome Aggregation Database | Global | Study-wide | 29954 | A=0.739 | G=0.260 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.780 | G=0.220 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.737 | G=0.262 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.813 | G=0.187 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs998023 | 0.000892 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr11 | 79829079 | 79829135 | E070 | 11827 |
| chr11 | 79829208 | 79829456 | E070 | 11956 |
| chr11 | 79776841 | 79777717 | E081 | -39535 |
| chr11 | 79799841 | 79800567 | E081 | -16685 |
| chr11 | 79856141 | 79856238 | E081 | 38889 |
| chr11 | 79856357 | 79856533 | E081 | 39105 |
| chr11 | 79858776 | 79858826 | E081 | 41524 |
| chr11 | 79858920 | 79858985 | E081 | 41668 |
| chr11 | 79859090 | 79859140 | E081 | 41838 |
| chr11 | 79859742 | 79859792 | E081 | 42490 |