DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
DSGSLFS
Uniprot ID:
Q10570
Source protein:
Cleavage and polyadenylation specificity factor subunit 1
Source gene:
CPSF1
Class:
DEG_SCF_TRCP1_1
Location:
750:756
E3 ligase:
BTRC
DEGRON score:
0.9268
ASA_SCORE:
58.7143
COIL:
0.7296
CONS_SCORE:
0.2627
DSS_SCORE:
0.6989
HELIX:
0.1489
FCONS_SCORE:
0.9705
RIG_SCORE:
0.6255
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S753F
TCGA-EK-A3GK
CESC
TCGA
DSGSLFS
DEG_SCF_TRCP1_1
0.7982
p.S753F
DO49964
CESC
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.7982
p.S751L
TCGA-49-6767
LUAD
TCGA
DSGSLFS
DEG_SCF_TRCP1_1
0.7667
p.S751L
DO23586
LUAD
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.7667
p.K759N
TCGA-FS-A1ZJ
SKCM
TCGA
DSGSLFS
DEG_SCF_TRCP1_1
0.6944
p.K759N
DO37956
SKCM
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.6944
p.L754F
SIDM00412
B-Cell Non-Hodgkin's Lymphoma
GDSC
DSGSLFS
DEG_SCF_TRCP1_1
0.587
p.E743K
DO234239
ESAD
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.1389
p.E743K
DO41217
UCEC
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.1389
p.D742N
TCGA-EK-A2RM
CESC
TCGA
DSGSLFS
DEG_SCF_TRCP1_1
0.1111
p.D742N
DO49956
CESC
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.1111
p.R764S
DO229489
LAML
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.1111
p.V740G
TCGA-04-1342
OV
TCGA
DSGSLFS
DEG_SCF_TRCP1_1
0.0556
p.V740G
DO29548
OV
ICGC
DSGSLFS
DEG_SCF_TRCP1_1
0.0556
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Drug responses associated with CPSF1 mutations
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Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of DSGSLFS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q10570
Cleavage and polyadenylation specificity factor subunit 1
DEG_SCF_TRCP1_1
750:756
DSGSLFS
BTRC
0.9268
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