DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGTRS
Uniprot ID:
O15056
Source protein:
Synaptojanin-2
Source gene:
SYNJ2
Class:
DEG_SCF_TRCP1_1
Location:
1438:1443
E3 ligase:
BTRC
DEGRON score:
0.9961
ASA_SCORE:
82.5167
COIL:
0.9427
CONS_SCORE:
0.3335
DSS_SCORE:
0.6447
HELIX:
0.0358
FCONS_SCORE:
0.9957
RIG_SCORE:
0.5721
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D1438Y
DO229045
LICA
ICGC
DSGTRS
DEG_SCF_TRCP1_1
0.7325
p.G1440E
TCGA-CZ-4866
KIRC
TCGA
DSGTRS
DEG_SCF_TRCP1_1
0.7199
p.G1440E
DO16218
KIRC
ICGC
DSGTRS
DEG_SCF_TRCP1_1
0.7199
p.P1444H
TCGA-EE-A29E
SKCM
TCGA
DSGTRS
DEG_SCF_TRCP1_1
0.3056
p.P1444H
DO37831
SKCM
ICGC
DSGTRS
DEG_SCF_TRCP1_1
0.3056
p.K1445R
SIDM00415
B-Cell Non-Hodgkin's Lymphoma
GDSC
DSGTRS
DEG_SCF_TRCP1_1
0.2778
p.K1445R
ACH-001639
Leukemia
CCLE
DSGTRS
DEG_SCF_TRCP1_1
0.2778
p.K1445R
ROS-50
haematopoietic_and_lymphoid_tissue
COSMIC
DSGTRS
DEG_SCF_TRCP1_1
0.2778
p.D1435N
TCGA-2G-AAGV
TGCT
TCGA
DSGTRS
DEG_SCF_TRCP1_1
0.25
p.D1447H
ACH-000338
Lymphoma
CCLE
DSGTRS
DEG_SCF_TRCP1_1
0.2222
p.L1430F
SIDM00291
Melanoma
GDSC
DSGTRS
DEG_SCF_TRCP1_1
0.1111
p.L1430F
HMV-II
skin
COSMIC
DSGTRS
DEG_SCF_TRCP1_1
0.1111
p.W1429C
DO229028
LICA
ICGC
DSGTRS
DEG_SCF_TRCP1_1
0.0833
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Drug responses associated with SYNJ2 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of DSGTRS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15056
Synaptojanin-2
DEG_SCF_TRCP1_1
1438:1443
DSGTRS
BTRC
0.9961
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