DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DVTPGSVPTGP
Uniprot ID:
Q9HCJ0
Source protein:
Trinucleotide repeat-containing gene 6C protein
Source gene:
TNRC6C
Class:
DEG_COP1_1
Location:
1408:1418
E3 ligase:
COP1
DEGRON score:
0.9988
ASA_SCORE:
74.8091
COIL:
0.939
CONS_SCORE:
0.6552
DSS_SCORE:
0.6724
HELIX:
0.0164
FCONS_SCORE:
1.2769
RIG_SCORE:
0.6514
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1428I
TCGA-AX-A0J1
UCEC
TCGA
DVTPGSVPTGP
DEG_COP1_1
0.0556
p.L1428I
DO41199
UCEC
ICGC
DVTPGSVPTGP
DEG_COP1_1
0.0556
p.V1406I
TCGA-D3-A8GC
SKCM
TCGA
DVTPGSVPTGP
DEG_COP1_1
0.2778
p.V1406I
DO50281
SKCM
ICGC
DVTPGSVPTGP
DEG_COP1_1
0.2778
p.P1415R
TCGA-UZ-A9PN
KIRP
TCGA
DVTPGSVPTGP
DEG_COP1_1
0.7512
p.P1415R
DO219703
KIRP
ICGC
DVTPGSVPTGP
DEG_COP1_1
0.7512
p.V1411I
DO233126
GACA
ICGC
DVTPGSVPTGP
DEG_COP1_1
0.7076
p.E1401V
DO27959
ORCA
ICGC
DVTPGSVPTGP
DEG_COP1_1
0.1389
p.T1420A
SIDM00661
B-Cell Non-Hodgkin's Lymphoma
GDSC
DVTPGSVPTGP
DEG_COP1_1
0.2778
p.T1420A
ACH-000914
Lymphoma
CCLE
DVTPGSVPTGP
DEG_COP1_1
0.2778
p.T1420A
HT
haematopoietic_and_lymphoid_tissue
COSMIC
DVTPGSVPTGP
DEG_COP1_1
0.2778
p.T1423A
HT
haematopoietic_and_lymphoid_tissue
COSMIC
DVTPGSVPTGP
DEG_COP1_1
0.1944
p.K1428E
LNCaP-Clone-FGC
prostate
COSMIC
DVTPGSVPTGP
DEG_COP1_1
0.0556
Drug responses associated with TNRC6C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DVTPGSVPTGP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9HCJ0
Trinucleotide repeat-containing gene 6C protein
DEG_COP1_1
1408:1418
DVTPGSVPTGP
COP1
0.9988
More...