DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DWSSAQVPEP
Uniprot ID:
Q9Y4G2
Source protein:
Pleckstrin homology domain-containing family M member 1
Source gene:
PLEKHM1
Class:
DEG_COP1_1
Location:
673:682
E3 ligase:
COP1
DEGRON score:
0.9711
ASA_SCORE:
79.25
COIL:
0.8106
CONS_SCORE:
0.2384
DSS_SCORE:
0.3917
HELIX:
0.1494
FCONS_SCORE:
0.8983
RIG_SCORE:
0.7619
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.W674L
TCGA-55-A490
LUAD
TCGA
DWSSAQVPEP
DEG_COP1_1
0.5904
p.F672L
TCGA-64-1676
LUAD
TCGA
DWSSAQVPEP
DEG_COP1_1
0.3056
p.D683H
TCGA-66-2785
LUSC
TCGA
DWSSAQVPEP
DEG_COP1_1
0.3056
p.S688Y
TCGA-A5-A0G1
UCEC
TCGA
DWSSAQVPEP
DEG_COP1_1
0.1667
p.S675L
TCGA-AZ-6601
COAD
TCGA
DWSSAQVPEP
DEG_COP1_1
0.6556
p.S675L
SIDM00457
Plasma Cell Myeloma
GDSC
DWSSAQVPEP
DEG_COP1_1
0.6556
p.S675L
SIDM00986
Head and Neck Carcinoma
GDSC
DWSSAQVPEP
DEG_COP1_1
0.6556
p.S675L
SIDM01470
Acute Myeloid Leukemia
GDSC
DWSSAQVPEP
DEG_COP1_1
0.6556
p.S675L
OPM-2
haematopoietic_and_lymphoid_tissue
COSMIC
DWSSAQVPEP
DEG_COP1_1
0.6556
p.S675L
BHY
upper_aerodigestive_tract
COSMIC
DWSSAQVPEP
DEG_COP1_1
0.6556
p.I685T
TCGA-DU-6392
LGG
TCGA
DWSSAQVPEP
DEG_COP1_1
0.25
p.P682S
TCGA-WS-AB45
COAD
TCGA
DWSSAQVPEP
DEG_COP1_1
0.6752
p.L682Q
DO52087
HNSC
ICGC
DWSSAQVPEP
DEG_COP1_1
0.7765
p.R684C
DO229446
SKCA
ICGC
DWSSAQVPEP
DEG_COP1_1
0.2778
p.R684C
DO42665
UCEC
ICGC
DWSSAQVPEP
DEG_COP1_1
0.2778
p.A673T
DO41235
UCEC
ICGC
DWSSAQVPEP
DEG_COP1_1
0.7139
p.D673Y
SIDM01229
Neuroblastoma
GDSC
DWSSAQVPEP
DEG_COP1_1
0.7325
p.D673Y
ACH-002217
Neuroblastoma
CCLE
DWSSAQVPEP
DEG_COP1_1
0.7325
p.D673Y
BE2-M17
autonomic_ganglia
COSMIC
DWSSAQVPEP
DEG_COP1_1
0.7325
Drug responses associated with PLEKHM1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DWSSAQVPEP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y4G2
Pleckstrin homology domain-containing family M member 1
DEG_COP1_1
673:682
DWSSAQVPEP
COP1
0.9711
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