DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
EKHSCTVPEGL
Uniprot ID:
Q86YC2
Source protein:
Partner and localizer of BRCA2
Source gene:
PALB2
Class:
DEG_COP1_1
Location:
392:402
E3 ligase:
COP1
DEGRON score:
0.9597
ASA_SCORE:
87.7182
COIL:
0.8374
CONS_SCORE:
0.671
DSS_SCORE:
0.2905
HELIX:
0.0714
FCONS_SCORE:
1.0587
RIG_SCORE:
0.7379
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E384K
TCGA-BA-A4IG
HNSC
TCGA
EKHSCTVPEGL
DEG_COP1_1
0.1111
p.E384K
DO52028
HNSC
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.1111
p.P405T
TCGA-DD-A4NQ
LIHC
TCGA
EKHSCTVPEGL
DEG_COP1_1
0.25
p.P405T
DO44887
LIHC
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.25
p.V410A
TCGA-DF-A2KN
UCEC
TCGA
EKHSCTVPEGL
DEG_COP1_1
0.1111
p.V410A
DO223282
UCEC
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.1111
p.A406V
TCGA-DF-A2KN
UCEC
TCGA
EKHSCTVPEGL
DEG_COP1_1
0.2222
p.A406V
DO223282
UCEC
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.2222
p.E392K
DO225392
BRCA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.7022
p.Y409H
DO227987
COCA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.1389
p.S395T
DO222555
ESCA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.6005
p.A406E
DO229022
LICA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.2222
p.L403V
DO221544
PACA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.3056
p.P388S
DO229465
SKCA
ICGC
EKHSCTVPEGL
DEG_COP1_1
0.2222
p.S382I
ACH-001301
Neuroblastoma
CCLE
EKHSCTVPEGL
DEG_COP1_1
0.5
Drug responses associated with PALB2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of EKHSCTVPEGL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YC2
Partner and localizer of BRCA2
DEG_COP1_1
392:402
EKHSCTVPEGL
COP1
0.9597
More...