DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
ENEDPLVPDV
Uniprot ID:
P55290
Source protein:
Cadherin-13
Source gene:
CDH13
Class:
DEG_COP1_1
Location:
445:454
E3 ligase:
COP1
DEGRON score:
0.9137
ASA_SCORE:
67.47
COIL:
0.7565
CONS_SCORE:
0.5403
DSS_SCORE:
0.3122
HELIX:
0.0247
FCONS_SCORE:
0.8938
RIG_SCORE:
0.7956
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G452R
TCGA-19-5959
GBM
TCGA
ENEDPLVPDV
DEG_COP1_1
0.7568
p.G452E
TCGA-3N-A9WD
SKCM
TCGA
ENEDPLVPDV
DEG_COP1_1
0.7199
p.E445K
DO37444
SKCM
ICGC
ENEDPLVPDV
DEG_COP1_1
0.7022
p.V451L
DO228948
LICA
ICGC
ENEDPLVPDV
DEG_COP1_1
0.6765
p.D448G
DO43041
UCEC
ICGC
ENEDPLVPDV
DEG_COP1_1
0.6087
p.V454I
WM1552C
skin
COSMIC
ENEDPLVPDV
DEG_COP1_1
0.5965
p.E447K
DO50291
SKCM
ICGC
ENEDPLVPDV
DEG_COP1_1
0.591
p.E447K
DO51301
SKCM
ICGC
ENEDPLVPDV
DEG_COP1_1
0.591
p.P449S
DO219735
CESC
ICGC
ENEDPLVPDV
DEG_COP1_1
0.5641
p.P449S
DO42977
UCEC
ICGC
ENEDPLVPDV
DEG_COP1_1
0.5641
p.G455R
TCGA-GN-A266
SKCM
TCGA
ENEDPLVPDV
DEG_COP1_1
0.3056
p.K443R
DO41578
UCEC
ICGC
ENEDPLVPDV
DEG_COP1_1
0.2778
p.G457S
DO3305
BRCA
ICGC
ENEDPLVPDV
DEG_COP1_1
0.25
p.G457S
DO48020
STAD
ICGC
ENEDPLVPDV
DEG_COP1_1
0.25
p.G457S
Calu-3
lung
COSMIC
ENEDPLVPDV
DEG_COP1_1
0.25
p.G457C
DO24800
LUAD
ICGC
ENEDPLVPDV
DEG_COP1_1
0.25
p.G441C
SIDM01617
Endometrial Carcinoma
GDSC
ENEDPLVPDV
DEG_COP1_1
0.2222
p.G441C
ACH-000994
Endometrial/Uterine Cancer
CCLE
ENEDPLVPDV
DEG_COP1_1
0.2222
p.H438Y
DO51274
SKCM
ICGC
ENEDPLVPDV
DEG_COP1_1
0.1389
p.H461Y
SIDM00007
Other Solid Cancers
GDSC
ENEDPLVPDV
DEG_COP1_1
0.1389
p.H461Y
ACH-001550
Skin Cancer
CCLE
ENEDPLVPDV
DEG_COP1_1
0.1389
p.H461Y
MCC13
skin
COSMIC
ENEDPLVPDV
DEG_COP1_1
0.1389
p.T462P
TCGA-56-8504
LUSC
TCGA
ENEDPLVPDV
DEG_COP1_1
0.1111
p.T462A
TCGA-AX-A1CE
UCEC
TCGA
ENEDPLVPDV
DEG_COP1_1
0.1111
p.D436N
TCGA-EE-A2GI
SKCM
TCGA
ENEDPLVPDV
DEG_COP1_1
0.0833
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Drug responses associated with CDH13 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of ENEDPLVPDV
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P55290
Cadherin-13
DEG_COP1_1
445:454
ENEDPLVPDV
COP1
0.9137
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