DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
ESSDSSDGEVPTA
Uniprot ID:
Q13428
Source protein:
Treacle protein
Source gene:
TCOF1
Class:
DEG_COP1_1
Location:
551:563
E3 ligase:
COP1
DEGRON score:
0.9956
ASA_SCORE:
92.6615
COIL:
0.9478
CONS_SCORE:
0.3716
DSS_SCORE:
0.788
HELIX:
0.0303
FCONS_SCORE:
1.0839
RIG_SCORE:
0.5715
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P566Q
TCGA-BF-A1PV
SKCM
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.25
p.P566Q
DO47309
SKCM
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.25
p.E543K
TCGA-C5-A7X5
CESC
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.1111
p.E543K
DO49894
CESC
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.1111
p.E551K
TCGA-C5-A7X5
CESC
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.7022
p.E551K
DO49894
CESC
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.7022
p.G573W
TCGA-EO-A3KX
UCEC
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.0556
p.G573W
DO219774
UCEC
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.0556
p.E546Q
TCGA-MV-A51V
BLCA
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.1944
p.E546Q
DO474
BLCA
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.1944
p.S552L
TCGA-VQ-A8PO
STAD
TCGA
ESSDSSDGEVPTA
DEG_COP1_1
0.7667
p.S552L
DO51773
STAD
ICGC
ESSDSSDGEVPTA
DEG_COP1_1
0.7667
p.N572D
NCI-H740
lung
COSMIC
ESSDSSDGEVPTA
DEG_COP1_1
0.0833
p.T551I
TOV-21G
ovary
COSMIC
ESSDSSDGEVPTA
DEG_COP1_1
0.7078
p.A548P
NCI-H2122
lung
COSMIC
ESSDSSDGEVPTA
DEG_COP1_1
0.25
Drug responses associated with TCOF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ESSDSSDGEVPTA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13428
Treacle protein
DEG_COP1_1
551:563
ESSDSSDGEVPTA
COP1
0.9956
More...