DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
FTPFDE
Uniprot ID:
O95196
Source protein:
Chondroitin sulfate proteoglycan 5
Source gene:
CSPG5
Class:
LIG_APCC_ABBA_1
Location:
257:262
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9237
ASA_SCORE:
64.8833
COIL:
0.8257
CONS_SCORE:
0.5253
DSS_SCORE:
0.4887
HELIX:
0.0782
FCONS_SCORE:
1.0973
RIG_SCORE:
0.7646
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R260S
H3255
lung
COSMIC
FTPFDE
LIG_APCC_ABBA_1
0.7427
p.T258A
DO229211
THCA
ICGC
FTPFDE
LIG_APCC_ABBA_1
0.6028
p.D261N
TCGA-BR-6452
STAD
TCGA
FTPFDE
LIG_APCC_ABBA_1
0.5821
p.D261N
DO38404
STAD
ICGC
FTPFDE
LIG_APCC_ABBA_1
0.5821
p.D256N
ACH-001973
Metastasis
CCLE
FTPFDE
LIG_APCC_ABBA_1
0.3056
p.D264H
DO46528
OV
ICGC
FTPFDE
LIG_APCC_ABBA_1
0.2778
p.E253D
OVK-18
ovary
COSMIC
FTPFDE
LIG_APCC_ABBA_1
0.2222
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Drug responses associated with CSPG5 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of FTPFDE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95196
Chondroitin sulfate proteoglycan 5
LIG_APCC_ABBA_1
257:262
FTPFDE
APC,CDC20,FZR1
0.9237
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