DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GRFKLDILK
Uniprot ID:
O60343
Source protein:
TBC1 domain family member 4
Source gene:
TBC1D4
Class:
DEG_APCC_DBOX_1
Location:
552:560
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6751
ASA_SCORE:
72.7778
COIL:
0.2326
CONS_SCORE:
0.3053
DSS_SCORE:
0.428
HELIX:
0.7486
FCONS_SCORE:
0.7946
RIG_SCORE:
0.8178
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E546K
TCGA-A5-A0G2
UCEC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.1667
p.E546K
DO41235
UCEC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.1667
p.D557N
TCGA-CR-7395
HNSC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.5821
p.D557N
DO14274
HNSC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.5821
p.T549S
TCGA-D7-A6EY
STAD
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.25
p.T549S
DO50118
STAD
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.25
p.N547H
TCGA-EY-A1GI
UCEC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
p.N547H
DO41211
UCEC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
p.N561H
DO222884
COCA
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.3056
p.K562R
DO220876
MELA
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.2778
p.K564N
SIDM01198
Burkitt's Lymphoma
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.K564N
ACH-000567
Lymphoma
CCLE
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.K564N
ST486
haematopoietic_and_lymphoid_tissue
COSMIC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.S542G
SIDM01039
Other Solid Cancers
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.0556
p.S542G
JAR
placenta
COSMIC
GRFKLDILK
DEG_APCC_DBOX_1
0.0556
p.K564R
SIDM00975
Melanoma
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.N547S
ACH-001063
Ovarian Cancer
CCLE
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
Drug responses associated with TBC1D4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GRFKLDILK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60343
TBC1 domain family member 4
DEG_APCC_DBOX_1
552:560
GRFKLDILK
APC,CDC20,FZR1
0.6751
More...