DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GRFKLDILK
Uniprot ID:
O60343
Source protein:
TBC1 domain family member 4
Source gene:
TBC1D4
Class:
DEG_APCC_DBOX_1
Location:
552:560
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6751
ASA_SCORE:
72.7778
COIL:
0.2326
CONS_SCORE:
0.3053
DSS_SCORE:
0.428
HELIX:
0.7486
FCONS_SCORE:
0.7946
RIG_SCORE:
0.8178
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D557N
TCGA-CR-7395
HNSC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.5821
p.D557N
DO14274
HNSC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.5821
p.K564N
SIDM01198
Burkitt's Lymphoma
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.K564N
ACH-000567
Lymphoma
CCLE
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.K564N
ST486
haematopoietic_and_lymphoid_tissue
COSMIC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.K564R
SIDM00975
Melanoma
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.3333
p.N561H
DO222884
COCA
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.3056
p.K562R
DO220876
MELA
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.2778
p.T549S
TCGA-D7-A6EY
STAD
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.25
p.T549S
DO50118
STAD
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.25
p.N547H
TCGA-EY-A1GI
UCEC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
p.N547H
DO41211
UCEC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
p.N547S
ACH-001063
Ovarian Cancer
CCLE
GRFKLDILK
DEG_APCC_DBOX_1
0.1944
p.E546K
TCGA-A5-A0G2
UCEC
TCGA
GRFKLDILK
DEG_APCC_DBOX_1
0.1667
p.E546K
DO41235
UCEC
ICGC
GRFKLDILK
DEG_APCC_DBOX_1
0.1667
p.S542G
SIDM01039
Other Solid Cancers
GDSC
GRFKLDILK
DEG_APCC_DBOX_1
0.0556
p.S542G
JAR
placenta
COSMIC
GRFKLDILK
DEG_APCC_DBOX_1
0.0556
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Drug responses associated with TBC1D4 mutations
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Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of GRFKLDILK
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60343
TBC1 domain family member 4
DEG_APCC_DBOX_1
552:560
GRFKLDILK
APC,CDC20,FZR1
0.6751
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