DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GRKKLTHLV
Uniprot ID:
Q9Y3D5
Source protein:
28S ribosomal protein S18c, mitochondrial
Source gene:
MRPS18C
Class:
DEG_APCC_DBOX_1
Location:
12:20
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8924
ASA_SCORE:
95.5556
COIL:
0.5576
CONS_SCORE:
0.4531
DSS_SCORE:
0.106
HELIX:
0.0913
FCONS_SCORE:
1.3925
RIG_SCORE:
0.8324
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A22T
TCGA-55-7815
LUAD
TCGA
GRKKLTHLV
DEG_APCC_DBOX_1
0.2778
p.A22T
DO24537
LUAD
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.2778
p.L16S
TCGA-EE-A3J7
SKCM
TCGA
GRKKLTHLV
DEG_APCC_DBOX_1
0.7667
p.L16S
DO48770
SKCM
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.7667
p.G9S
TCGA-UY-A9PE
BLCA
TCGA
GRKKLTHLV
DEG_APCC_DBOX_1
0.25
p.G9S
DO219043
BLCA
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.25
p.G9V
TCGA-UY-A9PE
BLCA
TCGA
GRKKLTHLV
DEG_APCC_DBOX_1
0.25
p.G9V
DO219043
BLCA
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.25
p.A23V
DO234150
ESAD
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.25
p.V24F
DO228974
LICA
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.2222
p.G10V
DO229036
LICA
ICGC
GRKKLTHLV
DEG_APCC_DBOX_1
0.2778
p.P29S
SIDM01028
Esophageal Squamous Cell Carcinoma
GDSC
GRKKLTHLV
DEG_APCC_DBOX_1
0.0833
p.P29S
ACH-000809
Esophageal Cancer
CCLE
GRKKLTHLV
DEG_APCC_DBOX_1
0.0833
p.P29S
KYSE-410
oesophagus
COSMIC
GRKKLTHLV
DEG_APCC_DBOX_1
0.0833
Drug responses associated with MRPS18C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GRKKLTHLV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y3D5
28S ribosomal protein S18c, mitochondrial
DEG_APCC_DBOX_1
12:20
GRKKLTHLV
APC,CDC20,FZR1
0.8924
More...