DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GRNKLKKIL
Uniprot ID:
Q9Y4G8
Source protein:
Rap guanine nucleotide exchange factor 2
Source gene:
RAPGEF2
Class:
DEG_APCC_DBOX_1
Location:
529:537
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5218
ASA_SCORE:
94.5889
COIL:
0.5271
CONS_SCORE:
0.3953
DSS_SCORE:
0.3694
HELIX:
0.4362
FCONS_SCORE:
1.0552
RIG_SCORE:
0.8124
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K521N
TCGA-95-7039
LUAD
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.2222
p.K521N
DO23907
LUAD
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.2222
p.D538N
TCGA-AG-A002
READ
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.3056
p.D538N
TCGA-EI-6917
READ
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.3056
p.D538N
DO36881
READ
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.3056
p.R541L
TCGA-BF-A1PZ
SKCM
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.2222
p.R541L
DO50279
SKCM
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.2222
p.S543N
TCGA-D3-A8GJ
SKCM
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.1667
p.S543N
DO50285
SKCM
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.1667
p.P546Q
TCGA-FS-A1ZG
SKCM
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.0833
p.P546Q
DO37523
SKCM
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.0833
p.K520N
TCGA-QG-A5Z1
COAD
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.1944
p.K520N
DO51731
COAD
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.1944
p.R530S
TCGA-XF-AAMG
BLCA
TCGA
GRNKLKKIL
DEG_APCC_DBOX_1
0.7427
p.R530S
DO219049
BLCA
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.7427
p.R541W
DO233854
GACA
ICGC
GRNKLKKIL
DEG_APCC_DBOX_1
0.2222
p.A531T
NCI-H1155
lung
COSMIC
GRNKLKKIL
DEG_APCC_DBOX_1
0.7139
Drug responses associated with RAPGEF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GRNKLKKIL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y4G8
Rap guanine nucleotide exchange factor 2
DEG_APCC_DBOX_1
529:537
GRNKLKKIL
APC,CDC20,FZR1
0.5218
More...