DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GRPQLKGVV
Uniprot ID:
O15235
Source protein:
28S ribosomal protein S12, mitochondrial
Source gene:
MRPS12
Class:
DEG_APCC_DBOX_1
Location:
54:62
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5503
ASA_SCORE:
50.4222
COIL:
0.5784
CONS_SCORE:
0.7049
DSS_SCORE:
0.511
HELIX:
0.0508
FCONS_SCORE:
1.0482
RIG_SCORE:
0.7189
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R47W
TCGA-55-8089
LUAD
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.1389
p.R47W
DO23690
LUAD
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.1389
p.P45L
TCGA-56-A49D
LUSC
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.0833
p.P45L
TCGA-A5-A0G2
UCEC
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.0833
p.P45L
DO45475
LUSC
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0833
p.P45L
DO41235
UCEC
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0833
p.P56L
TCGA-AA-A02K
COAD
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.6471
p.P56L
DO9812
COAD
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.6471
p.G60D
TCGA-AX-A1CE
UCEC
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.6087
p.G60D
DO42280
UCEC
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.6087
p.P51H
TCGA-CZ-5457
KIRC
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.P51H
DO18036
KIRC
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.T65M
TCGA-D1-A17B
UCEC
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.T65M
TCGA-VQ-A8PO
STAD
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.T65M
DO51773
STAD
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.T65M
DO43017
UCEC
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.25
p.R47L
TCGA-EE-A181
SKCM
TCGA
GRPQLKGVV
DEG_APCC_DBOX_1
0.1389
p.R47L
DO37444
SKCM
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.1389
p.R44G
DO228483
BRCA
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM00232
Kidney Carcinoma
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM01005
Acute Myeloid Leukemia
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM00328
Esophageal Squamous Cell Carcinoma
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM00996
Thyroid Gland Carcinoma
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM01433
Kidney Carcinoma
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
SIDM01694
B-Lymphoblastic Leukemia
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
NCC021
kidney
COSMIC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
TE-6
oesophagus
COSMIC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
8505C
thyroid
COSMIC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44G
KASUMI-1
haematopoietic_and_lymphoid_tissue
COSMIC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R68C
DO230326
COCA
ICGC
GRPQLKGVV
DEG_APCC_DBOX_1
0.1667
p.R44Q
SIDM01073
Other Blood Cancers
GDSC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44Q
ACH-002242
Leukemia
CCLE
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
p.R44Q
HC-1
haematopoietic_and_lymphoid_tissue
COSMIC
GRPQLKGVV
DEG_APCC_DBOX_1
0.0556
Drug responses associated with MRPS12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GRPQLKGVV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15235
28S ribosomal protein S12, mitochondrial
DEG_APCC_DBOX_1
54:62
GRPQLKGVV
APC,CDC20,FZR1
0.5503
More...