DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
GRTGLPDLS
Uniprot ID:
P55036
Source protein:
26S proteasome non-ATPase regulatory subunit 4
Source gene:
PSMD4
Class:
DEG_APCC_DBOX_1
Location:
271:279
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9764
ASA_SCORE:
77.2444
COIL:
0.7977
CONS_SCORE:
0.2684
DSS_SCORE:
0.5641
HELIX:
0.1673
FCONS_SCORE:
0.7094
RIG_SCORE:
0.7067
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E283K
TCGA-25-1323
OV
TCGA
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.E283K
DO29810
OV
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.R272C
TCGA-A5-A0G2
UCEC
TCGA
GRTGLPDLS
DEG_APCC_DBOX_1
0.8301
p.R272C
DO41235
UCEC
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.8301
p.E283Q
TCGA-DK-A1AF
BLCA
TCGA
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.E283Q
DO633
BLCA
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.Q268E
DO225390
BRCA
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.25
p.Q267H
DO229019
LICA
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.Q267H
DO46873
RECA
ICGC
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.Q270L
SIDM01117
Small Cell Lung Carcinoma
GDSC
GRTGLPDLS
DEG_APCC_DBOX_1
0.3056
p.Q270L
NCI-H748
lung
COSMIC
GRTGLPDLS
DEG_APCC_DBOX_1
0.3056
p.T264A
ACH-002069
Bone Cancer
CCLE
GRTGLPDLS
DEG_APCC_DBOX_1
0.1389
p.R272H
ACH-002089
Lung Cancer
CCLE
GRTGLPDLS
DEG_APCC_DBOX_1
0.8244
p.R272H
201T
lung
COSMIC
GRTGLPDLS
DEG_APCC_DBOX_1
0.8244
p.Q267L
ACH-002176
Lung Cancer
CCLE
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.Q267L
NCI-H748
lung
COSMIC
GRTGLPDLS
DEG_APCC_DBOX_1
0.2222
p.R275H
201T
lung
COSMIC
GRTGLPDLS
DEG_APCC_DBOX_1
0.8244
Drug responses associated with PSMD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GRTGLPDLS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P55036
26S proteasome non-ATPase regulatory subunit 4
DEG_APCC_DBOX_1
271:279
GRTGLPDLS
APC,CDC20,FZR1
0.9764
More...