DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
IAPVSSTSPGIKV
Uniprot ID:
A6NKB5
Source protein:
Pecanex-like protein 2
Source gene:
PCNX2
Class:
DEG_ODPH_VHL_1
Location:
182:194
E3 ligase:
VHL
DEGRON score:
0.9762
ASA_SCORE:
79.3385
COIL:
0.8678
CONS_SCORE:
0.369
DSS_SCORE:
0.4521
HELIX:
0.0317
FCONS_SCORE:
1.1158
RIG_SCORE:
0.6791
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S200F
SIDM00516
Melanoma
GDSC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.1667
p.S200F
MZ7-mel
skin
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.1667
p.A199V
SIDM00365
Small Cell Lung Carcinoma
GDSC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.1944
p.A199V
SBC-1
lung
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.1944
p.S186A
SIDM00217
Colorectal Carcinoma
GDSC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.6477
p.S186A
SNU-1040
large_intestine
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.6477
p.I186V
SK-PN-DW
bone
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.7076
p.R183C
NCI-H630
large_intestine
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.8301
p.I186M
HGC-27
stomach
COSMIC
IAPVSSTSPGIKV
DEG_ODPH_VHL_1
0.7618
Drug responses associated with PCNX2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of IAPVSSTSPGIKV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NKB5
Pecanex-like protein 2
DEG_ODPH_VHL_1
182:194
IAPVSSTSPGIKV
VHL
0.9762
More...