DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
ICVFAD
Uniprot ID:
Q96EM0
Source protein:
Trans-3-hydroxy-L-proline dehydratase
Source gene:
L3HYPDH
Class:
LIG_APCC_ABBA_1
Location:
260:265
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.637
ASA_SCORE:
20.95
COIL:
0.2737
CONS_SCORE:
0.598
DSS_SCORE:
0.3728
HELIX:
0.0612
FCONS_SCORE:
0.9666
RIG_SCORE:
0.916
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N259T
TCGA-B0-5121
KIRC
TCGA
ICVFAD
LIG_APCC_ABBA_1
0.3056
p.E255K
TCGA-EE-A181
SKCM
TCGA
ICVFAD
LIG_APCC_ABBA_1
0.1944
p.A251T
TCGA-HF-7132
STAD
TCGA
ICVFAD
LIG_APCC_ABBA_1
0.0833
p.A251D
SIDM01129
Small Cell Lung Carcinoma
GDSC
ICVFAD
LIG_APCC_ABBA_1
0.0833
p.A251D
NCI-H524
lung
COSMIC
ICVFAD
LIG_APCC_ABBA_1
0.0833
p.V268I
SIDM00658
Non-Small Cell Lung Carcinoma
GDSC
ICVFAD
LIG_APCC_ABBA_1
0.25
p.V268I
NCI-H1435
lung
COSMIC
ICVFAD
LIG_APCC_ABBA_1
0.25
p.C261F
SIDM00783
Colorectal Carcinoma
GDSC
ICVFAD
LIG_APCC_ABBA_1
0.5996
p.C261F
HCT-116
large_intestine
COSMIC
ICVFAD
LIG_APCC_ABBA_1
0.5996
Drug responses associated with L3HYPDH mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ICVFAD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96EM0
Trans-3-hydroxy-L-proline dehydratase
LIG_APCC_ABBA_1
260:265
ICVFAD
APC,CDC20,FZR1
0.637
More...