DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
IDVFED
Uniprot ID:
Q07954
Source protein:
Prolow-density lipoprotein receptor-related protein 1
Source gene:
LRP1
Class:
LIG_APCC_ABBA_1
Location:
4095:4100
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6529
ASA_SCORE:
37.4167
COIL:
0.339
CONS_SCORE:
0.8049
DSS_SCORE:
0.0326
HELIX:
0.002
FCONS_SCORE:
1.6359
RIG_SCORE:
0.9234
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N4109S
TCGA-D8-A142
BRCA
TCGA
IDVFED
LIG_APCC_ABBA_1
0.0833
p.N4109S
DO4984
BRCA
ICGC
IDVFED
LIG_APCC_ABBA_1
0.0833
p.D4096N
TCGA-EE-A3J5
SKCM
TCGA
IDVFED
LIG_APCC_ABBA_1
0.5821
p.D4096N
TCGA-XK-AAIW
PRAD
TCGA
IDVFED
LIG_APCC_ABBA_1
0.5821
p.D4096N
DO233697
GACA
ICGC
IDVFED
LIG_APCC_ABBA_1
0.5821
p.D4096N
DO51407
PRAD
ICGC
IDVFED
LIG_APCC_ABBA_1
0.5821
p.D4096N
DO47331
SKCM
ICGC
IDVFED
LIG_APCC_ABBA_1
0.5821
p.G4104V
DO229045
LICA
ICGC
IDVFED
LIG_APCC_ABBA_1
0.2222
p.N4110T
SIDM00120
Prostate Carcinoma
GDSC
IDVFED
LIG_APCC_ABBA_1
0.0556
p.N4110T
ACH-000979
Prostate Cancer
CCLE
IDVFED
LIG_APCC_ABBA_1
0.0556
p.N4110T
DU-145
prostate
COSMIC
IDVFED
LIG_APCC_ABBA_1
0.0556
p.V4097I
ACH-000170
Non-Cancerous
CCLE
IDVFED
LIG_APCC_ABBA_1
0.5965
Drug responses associated with LRP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of IDVFED
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q07954
Prolow-density lipoprotein receptor-related protein 1
LIG_APCC_ABBA_1
4095:4100
IDVFED
APC,CDC20,FZR1
0.6529
More...