DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
IKVYDD
Uniprot ID:
Q9NP74
Source protein:
Palmdelphin
Source gene:
PALMD
Class:
LIG_APCC_ABBA_1
Location:
207:212
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9334
ASA_SCORE:
68.55
COIL:
0.4267
CONS_SCORE:
0.896
DSS_SCORE:
0.3038
HELIX:
0.0295
FCONS_SCORE:
1.2238
RIG_SCORE:
0.8085
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G206R
TCGA-73-4666
LUAD
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.3056
p.G206R
DO26230
LUAD
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.3056
p.A219V
TCGA-AA-A01R
COAD
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.1389
p.A219V
DO7934
COAD
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.1389
p.V209I
TCGA-DF-A2KU
UCEC
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.5965
p.V209I
DO223286
UCEC
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.5965
p.S221R
TCGA-E6-A1LX
UCEC
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.0833
p.S221R
DO41020
UCEC
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.0833
p.P198S
TCGA-W3-AA1R
SKCM
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.0833
p.P198S
DO51275
SKCM
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.0833
p.S216P
TCGA-XF-A9ST
BLCA
TCGA
IKVYDD
LIG_APCC_ABBA_1
0.2222
p.S216P
DO223599
BLCA
ICGC
IKVYDD
LIG_APCC_ABBA_1
0.2222
p.T205A
SIDM00217
Colorectal Carcinoma
GDSC
IKVYDD
LIG_APCC_ABBA_1
0.2778
p.T205A
ACH-000999
Colon/Colorectal Cancer
CCLE
IKVYDD
LIG_APCC_ABBA_1
0.2778
p.T205A
SNU-1040
large_intestine
COSMIC
IKVYDD
LIG_APCC_ABBA_1
0.2778
p.I222M
IST-SL1
lung
COSMIC
IKVYDD
LIG_APCC_ABBA_1
0.0556
Drug responses associated with PALMD mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of IKVYDD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NP74
Palmdelphin
LIG_APCC_ABBA_1
207:212
IKVYDD
APC,CDC20,FZR1
0.9334
More...