DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
KDLLHVD
Uniprot ID:
Q8IW52
Source protein:
SLIT and NTRK-like protein 4
Source gene:
SLITRK4
Class:
LIG_APCC_ABBAyCdc20_2
Location:
729:735
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6719
ASA_SCORE:
82.1714
COIL:
0.5576
CONS_SCORE:
0.3784
DSS_SCORE:
0.3193
HELIX:
0.3847
FCONS_SCORE:
1.0095
RIG_SCORE:
0.8244
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V720A
TCGA-14-0866
GBM
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.0833
p.V720A
DO11878
GBM
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.0833
p.D726E
TCGA-78-7155
LUAD
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726E
DO23590
LUAD
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726E
SIDM00630
Breast Carcinoma
GDSC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726E
SIDM01228
Melanoma
GDSC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726E
CHL-1
skin
COSMIC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726E
MDA-MB-415
breast
COSMIC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726N
TCGA-AP-A0LM
UCEC
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726N
TCGA-EY-A1GV
UCEC
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726N
DO43306
UCEC
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.D726N
DO42785
UCEC
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.25
p.E728K
TCGA-BF-AAP4
SKCM
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.3056
p.E728K
DO219468
SKCM
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.3056
p.R722I
TCGA-DK-A6AW
BLCA
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R722I
DO48566
BLCA
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.E745K
TCGA-PE-A5DE
BRCA
TCGA
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.0556
p.E745K
DO219643
BRCA
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.0556
p.K729N
DO228621
GACA
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.6918
p.V724L
DO50842
LIRI
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.1944
p.V724A
DO231419
THCA
ICGC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.1944
p.D735H
SIDM01590
Breast Carcinoma
GDSC
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.7688
p.D735H
ACH-000184
Non-Cancerous
CCLE
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.7688
p.A725V
ACH-000773
Lymphoma
CCLE
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.2222
p.A725S
ACH-000773
Lymphoma
CCLE
KDLLHVD
LIG_APCC_ABBAyCdc20_2
0.2222
Drug responses associated with SLITRK4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KDLLHVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IW52
SLIT and NTRK-like protein 4
LIG_APCC_ABBAyCdc20_2
729:735
KDLLHVD
APC,CDC20,FZR1
0.6719
More...