DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
KGDIYNE
Uniprot ID:
P33151
Source protein:
Cadherin-5
Source gene:
CDH5
Class:
LIG_APCC_ABBAyCdc20_2
Location:
424:430
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5168
ASA_SCORE:
58.2286
COIL:
0.4999
CONS_SCORE:
0.5292
DSS_SCORE:
0.2789
HELIX:
0.0076
FCONS_SCORE:
1.0064
RIG_SCORE:
0.8143
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V421A
TCGA-43-A56U
LUSC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.25
p.V421A
DO49083
LUSC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.25
p.K415N
TCGA-AP-A0LE
UCEC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1944
p.K415N
DO43418
UCEC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1944
p.E430V
TCGA-B0-5080
KIRC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.7693
p.E430V
DO18154
KIRC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.7693
p.P439L
TCGA-CN-4741
HNSC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.0833
p.P439L
DO14313
HNSC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.0833
p.G416S
TCGA-EB-A41A
SKCM
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.G416S
TCGA-FI-A2D0
UCEC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.G416S
DO37429
SKCM
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.G416S
DO43891
UCEC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.F418L
TCGA-IB-7651
PAAD
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1667
p.F418L
DO46657
PAAD
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1667
p.E430D
TCGA-MA-AA3Z
CESC
TCGA
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5647
p.E430D
DO219722
CESC
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5647
p.E430D
SIDM00253
Neuroblastoma
GDSC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5647
p.E430D
ACH-002284
Neuroblastoma
CCLE
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5647
p.E430D
NB6
autonomic_ganglia
COSMIC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5647
p.F418S
DO233668
GACA
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1667
p.D414Y
DO229018
LICA
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.0556
p.D426N
DO220907
MELA
ICGC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.5821
p.K415E
SIDM01617
Endometrial Carcinoma
GDSC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1944
p.K424R
SIDM01770
Gastric Carcinoma
GDSC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.6126
p.N417D
RKO
large_intestine
COSMIC
KGDIYNE
LIG_APCC_ABBAyCdc20_2
0.1389
Drug responses associated with CDH5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KGDIYNE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P33151
Cadherin-5
LIG_APCC_ABBAyCdc20_2
424:430
KGDIYNE
APC,CDC20,FZR1
0.5168
More...