DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
KGVVFNE
Uniprot ID:
Q5JRX3
Source protein:
Presequence protease, mitochondrial
Source gene:
PITRM1
Class:
LIG_APCC_ABBAyCdc20_2
Location:
199:205
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6789
ASA_SCORE:
21.7571
COIL:
0.2773
CONS_SCORE:
0.7478
DSS_SCORE:
0.2974
HELIX:
0.0791
FCONS_SCORE:
1.841
RIG_SCORE:
0.8262
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D191N
TCGA-2W-A8YY
CESC
TCGA
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.N213D
TCGA-EO-A22R
UCEC
TCGA
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.L194F
DO481
BLCA
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.6389
p.P195S
DO20778
KIRP
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.2222
p.D196Y
DO23726
LUAD
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.25
p.T198M
DO50734
ORCA
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.E212D
DO232224
PBCA
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.S200T
DO229259
THCA
ICGC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.7116
p.P192L
SIDM01158
Squamous Cell Lung Carcinoma
GDSC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.P192L
ACH-000669
Lung Cancer
CCLE
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.P192L
SW900
lung
COSMIC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.D212G
SIDM01450
Gastric Carcinoma
GDSC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.D212G
ACH-000898
Gastric Cancer
CCLE
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.D206N
8305C
thyroid
COSMIC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.R191W
JiyoyeP-2003
haematopoietic_and_lymphoid_tissue
COSMIC
KGVVFNE
LIG_APCC_ABBAyCdc20_2
0.1111
Drug responses associated with PITRM1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KGVVFNE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5JRX3
Presequence protease, mitochondrial
LIG_APCC_ABBAyCdc20_2
199:205
KGVVFNE
APC,CDC20,FZR1
0.6789
More...