DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
KNDLYRE
Uniprot ID:
Q16560
Source protein:
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Source gene:
SNRNP35
Class:
LIG_APCC_ABBAyCdc20_2
Location:
172:178
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9525
ASA_SCORE:
118.1
COIL:
0.8364
CONS_SCORE:
0.4144
DSS_SCORE:
0.4621
HELIX:
0.1703
FCONS_SCORE:
0.8342
RIG_SCORE:
0.7754
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R163W
TCGA-AJ-A3BH
UCEC
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.0833
p.R163W
TCGA-OR-A5J5
ACC
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.0833
p.D179N
TCGA-AX-A1CE
UCEC
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.3056
p.D179N
TCGA-AZ-6607
COAD
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.3056
p.R168Q
TCGA-B5-A11E
UCEC
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.2222
p.R168Q
TCGA-CA-6718
COAD
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.2222
p.R188M
TCGA-D1-A2G0
UCEC
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.0556
p.R186Q
TCGA-DJ-A1QH
THCA
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.1111
p.R186Q
DO22237
LGG
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.1111
p.R186Q
DO41572
UCEC
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.1111
p.L173M
TCGA-ER-A1A1
SKCM
TCGA
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.711
p.R163Q
DO7801
COAD
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.0833
p.R163Q
DO41644
UCEC
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.0833
p.D174N
DO8522
COAD
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.5821
p.D174N
DO42280
UCEC
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.5821
p.L168M
DO37413
SKCM
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.2222
p.R181Q
DO39000
THCA
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.25
p.R183M
DO43049
UCEC
ICGC
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.1944
p.E178G
ACH-001164
Sarcoma
CCLE
KNDLYRE
LIG_APCC_ABBAyCdc20_2
0.7199
Drug responses associated with SNRNP35 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KNDLYRE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q16560
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
LIG_APCC_ABBAyCdc20_2
172:178
KNDLYRE
APC,CDC20,FZR1
0.9525
More...