DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
KPELYEE
Uniprot ID:
Q9UK41
Source protein:
Vacuolar protein sorting-associated protein 28 homolog
Source gene:
VPS28
Class:
LIG_APCC_ABBAyCdc20_2
Location:
17:23
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6008
ASA_SCORE:
105.0571
COIL:
0.7494
CONS_SCORE:
0.5117
DSS_SCORE:
0.3442
HELIX:
0.1177
FCONS_SCORE:
1.1372
RIG_SCORE:
0.7918
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P18L
TCGA-XK-AAIW
PRAD
TCGA
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.6471
p.P18L
DO51407
PRAD
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.6471
p.G15R
TCGA-AD-6895
COAD
TCGA
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.2778
p.G15R
DO8938
COAD
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.2778
p.P14H
TCGA-A4-7734
KIRP
TCGA
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.25
p.P14H
DO20893
KIRP
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.25
p.G12R
SIDM01024
Esophageal Squamous Cell Carcinoma
GDSC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.1944
p.G12R
ACH-000784
Esophageal Cancer
CCLE
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.1944
p.G12R
KYSE-70
oesophagus
COSMIC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.1944
p.N29K
DO229015
LICA
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.1667
p.N29K
DO229041
LICA
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.1667
p.E32D
DO225346
BRCA
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.0833
p.E32Q
DO233146
GACA
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.0833
p.E32K
DO229234
THCA
ICGC
KPELYEE
LIG_APCC_ABBAyCdc20_2
0.0833
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Drug responses associated with VPS28 mutations
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Sample
Cancer
Mutation (In Degron?)
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Drug
IC50
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All proteins holding degron of KPELYEE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UK41
Vacuolar protein sorting-associated protein 28 homolog
LIG_APCC_ABBAyCdc20_2
17:23
KPELYEE
APC,CDC20,FZR1
0.6008
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