DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
KPTIFSD
Uniprot ID:
Q8NEM2
Source protein:
SHC SH2 domain-binding protein 1
Source gene:
SHCBP1
Class:
LIG_APCC_ABBAyCdc20_2
Location:
548:554
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8346
ASA_SCORE:
49.2143
COIL:
0.7551
CONS_SCORE:
0.2731
DSS_SCORE:
0.3039
HELIX:
0.0936
FCONS_SCORE:
0.7425
RIG_SCORE:
0.854
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N539H
TCGA-BH-A0HQ
BRCA
TCGA
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.N539H
DO3082
BRCA
ICGC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.A559G
TCGA-MI-A75E
LIHC
TCGA
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1944
p.A559G
DO49707
LIHC
ICGC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1944
p.G562E
DO222884
COCA
ICGC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1111
p.T563N
DO229036
LICA
ICGC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.P549L
SIDM00473
Oral Cavity Carcinoma
GDSC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.6471
p.P549L
ACH-000619
Head and Neck Cancer
CCLE
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.6471
p.G541S
SIDM01412
Oral Cavity Carcinoma
GDSC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1389
p.G541S
ACH-000762
Head and Neck Cancer
CCLE
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1389
p.G543V
SIDM01387
Small Cell Lung Carcinoma
GDSC
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1944
p.G543V
ACH-000921
Lung Cancer
CCLE
KPTIFSD
LIG_APCC_ABBAyCdc20_2
0.1944
Drug responses associated with SHCBP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KPTIFSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8NEM2
SHC SH2 domain-binding protein 1
LIG_APCC_ABBAyCdc20_2
548:554
KPTIFSD
APC,CDC20,FZR1
0.8346
More...