DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
KSGLFPE
Uniprot ID:
Q96C24
Source protein:
Synaptotagmin-like protein 4
Source gene:
SYTL4
Class:
LIG_APCC_ABBAyCdc20_2
Location:
220:226
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9976
ASA_SCORE:
85.3571
COIL:
0.8161
CONS_SCORE:
0.428
DSS_SCORE:
0.5247
HELIX:
0.1507
FCONS_SCORE:
1.0781
RIG_SCORE:
0.6899
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P233S
TCGA-18-3409
LUSC
TCGA
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.1389
p.P233S
DO26444
LUSC
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.1389
p.Q236H
TCGA-CA-6717
COAD
TCGA
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.0556
p.Q236H
DO8264
COAD
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.0556
p.S213C
TCGA-HG-A9SC
CESC
TCGA
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.5833
p.S213C
DO51603
CESC
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.5833
p.S235Y
TCGA-XF-A8HG
BLCA
TCGA
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.0833
p.S235Y
DO49802
BLCA
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.0833
p.S231F
DO222554
MELA
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.6389
p.P225S
DO222904
MELA
ICGC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.5641
p.L223P
SIDM00609
Kidney Carcinoma
GDSC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.7582
p.L223P
ACH-000250
Kidney Cancer
CCLE
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.7582
p.L223P
KMRC-20
kidney
COSMIC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.7582
p.A232S
SIDM00368
Small Cell Lung Carcinoma
GDSC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.1667
p.A232S
SBC-5
lung
COSMIC
KSGLFPE
LIG_APCC_ABBAyCdc20_2
0.1667
Drug responses associated with SYTL4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of KSGLFPE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96C24
Synaptotagmin-like protein 4
LIG_APCC_ABBAyCdc20_2
220:226
KSGLFPE
APC,CDC20,FZR1
0.9976
More...