DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
KTDLHNE
Uniprot ID:
Q14699
Source protein:
Raftlin
Source gene:
RFTN1
Class:
LIG_APCC_ABBAyCdc20_2
Location:
114:120
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6065
ASA_SCORE:
98.4857
COIL:
0.8151
CONS_SCORE:
0.3636
DSS_SCORE:
0.2699
HELIX:
0.1243
FCONS_SCORE:
0.654
RIG_SCORE:
0.7558
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A115P
DO219131
LUSC
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.7503
p.K114E
ACH-001484
Leukemia
CCLE
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.7022
p.K114E
ACH-001485
Leukemia
CCLE
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.7022
p.D116V
TCGA-DU-6404
LGG
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.6674
p.D116V
DO22207
LGG
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.6674
p.D116N
TCGA-FS-A1ZZ
SKCM
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.5821
p.Q113L
TCGA-DD-AACQ
LIHC
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.Q113L
DO52211
LIHC
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.Q113H
DO37851
SKCM
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.Q113H
DO38033
SKCM
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.3056
p.S112Y
TCGA-F5-6814
READ
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.2778
p.R111I
TCGA-3N-A9WC
SKCM
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.R111I
DO51234
SKCM
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.I123M
TCGA-RS-A6TP
HNSC
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.I123M
DO219062
HNSC
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.V123G
DO10172
COAD
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.V123I
DO52026
LUSC
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.25
p.D110E
DO228974
LICA
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.2222
p.V125I
DO228396
MALY
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.1944
p.D127H
TCGA-A8-A09G
BRCA
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.1389
p.I106M
TCGA-4Z-AA7W
BLCA
TCGA
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.Q128R
OPM-2
haematopoietic_and_lymphoid_tissue
COSMIC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.1111
p.H130Y
DO38404
STAD
ICGC
KTDLHNE
LIG_APCC_ABBAyCdc20_2
0.0556
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Drug responses associated with RFTN1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of KTDLHNE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14699
Raftlin
LIG_APCC_ABBAyCdc20_2
114:120
KTDLHNE
APC,CDC20,FZR1
0.6065
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