DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LAMFED
Uniprot ID:
O75486
Source protein:
Transcription initiation protein SPT3 homolog
Source gene:
SUPT3H
Class:
LIG_APCC_ABBA_1
Location:
151:156
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7895
ASA_SCORE:
76.5
COIL:
0.4705
CONS_SCORE:
0.4916
DSS_SCORE:
0.4475
HELIX:
0.481
FCONS_SCORE:
0.9893
RIG_SCORE:
0.806
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N142D
TCGA-09-2050
OV
TCGA
LAMFED
LIG_APCC_ABBA_1
0.0833
p.N142D
DO31869
OV
ICGC
LAMFED
LIG_APCC_ABBA_1
0.0833
p.D156N
TCGA-EO-A3B0
UCEC
TCGA
LAMFED
LIG_APCC_ABBA_1
0.6932
p.D156N
DO219773
UCEC
ICGC
LAMFED
LIG_APCC_ABBA_1
0.6932
p.R144T
DO222461
BTCA
ICGC
LAMFED
LIG_APCC_ABBA_1
0.1389
p.R144T
DO222787
BTCA
ICGC
LAMFED
LIG_APCC_ABBA_1
0.1389
p.D156A
DO222798
COCA
ICGC
LAMFED
LIG_APCC_ABBA_1
0.7793
p.D156Y
SIDM00255
Neuroblastoma
GDSC
LAMFED
LIG_APCC_ABBA_1
0.7325
p.D156Y
NB17
autonomic_ganglia
COSMIC
LAMFED
LIG_APCC_ABBA_1
0.7325
p.I147V
SIDM01658
Unknown
GDSC
LAMFED
LIG_APCC_ABBA_1
0.2222
p.V162L
ACH-001229
Primary
CCLE
LAMFED
LIG_APCC_ABBA_1
0.1667
p.D145Y
ACH-002282
Neuroblastoma
CCLE
LAMFED
LIG_APCC_ABBA_1
0.1667
p.D145Y
NB17
autonomic_ganglia
COSMIC
LAMFED
LIG_APCC_ABBA_1
0.1667
p.A161V
YKG-1
central_nervous_system
COSMIC
LAMFED
LIG_APCC_ABBA_1
0.1944
p.S142G
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
LAMFED
LIG_APCC_ABBA_1
0.0833
p.R156L
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
LAMFED
LIG_APCC_ABBA_1
0.8428
Drug responses associated with SUPT3H mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAMFED
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75486
Transcription initiation protein SPT3 homolog
LIG_APCC_ABBA_1
151:156
LAMFED
APC,CDC20,FZR1
0.7895
More...