DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPAPTPPSSGIPI
Uniprot ID:
Q9NZ52
Source protein:
ADP-ribosylation factor-binding protein GGA3
Source gene:
GGA3
Class:
DEG_ODPH_VHL_1
Location:
342:355
E3 ligase:
VHL
DEGRON score:
0.969
ASA_SCORE:
83.9214
COIL:
0.9576
CONS_SCORE:
0.2645
DSS_SCORE:
0.6673
HELIX:
0.0201
FCONS_SCORE:
1.0115
RIG_SCORE:
0.5788
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D333Y
TCGA-2G-AAFH
TGCT
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.0833
p.Q361K
TCGA-66-2795
LUSC
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1667
p.L338V
TCGA-AA-3984
COAD
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.2222
p.G352D
TCGA-BR-8361
STAD
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.6087
p.S351L
TCGA-CR-6481
HNSC
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.6556
p.S337T
TCGA-ER-A2NG
SKCM
TCGA
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1944
p.S338C
DO51612
CESC
ICGC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.2222
p.L362I
DO228974
LICA
ICGC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1389
p.P332T
DO229041
LICA
ICGC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.0556
p.S349R
DO229009
LICA
ICGC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.7427
p.R334Q
DO38288
STAD
ICGC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1111
p.A362D
SIDM00596
Endometrial Carcinoma
GDSC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1389
p.A362D
HEC-1
endometrium
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1389
p.A345T
SIDM00651
Non-Small Cell Lung Carcinoma
GDSC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.6028
p.A345T
NCI-H1155
lung
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.6028
p.D333N
SIDM00850
Gastric Carcinoma
GDSC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.0833
p.D333N
AGS
stomach
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.0833
p.R334W
SK-UT-1
soft_tissue
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.1111
p.S338P
SIG-M5
haematopoietic_and_lymphoid_tissue
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.2222
p.S338A
SU-DHL-16
haematopoietic_and_lymphoid_tissue
COSMIC
LAPAPTPPSSGIPI
DEG_ODPH_VHL_1
0.2222
Drug responses associated with GGA3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPAPTPPSSGIPI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NZ52
ADP-ribosylation factor-binding protein GGA3
DEG_ODPH_VHL_1
342:355
LAPAPTPPSSGIPI
VHL
0.969
More...