DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
LAPGAPAVDSLGM
Uniprot ID:
Q9UPS6
Source protein:
Histone-lysine N-methyltransferase SETD1B
Source gene:
SETD1B
Class:
DEG_ODPH_VHL_1
Location:
1218:1230
E3 ligase:
VHL
DEGRON score:
0.5807
ASA_SCORE:
73.5538
COIL:
0.8041
CONS_SCORE:
0.2451
DSS_SCORE:
0.7134
HELIX:
0.136
FCONS_SCORE:
0.9442
RIG_SCORE:
0.6552
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D1221N
TCGA-5M-AAT6
COAD
TCGA
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.6932
p.A1220V
TCGA-AA-3864
COAD
TCGA
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.6936
p.A1220V
ACH-000969
Colon/Colorectal Cancer
CCLE
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.6936
p.P1223H
DO219728
CESC
ICGC
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.6583
p.E1237K
DO233115
GACA
ICGC
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.1389
p.D1235Y
DO229038
LICA
ICGC
LAPGAPAVDSLGM
DEG_ODPH_VHL_1
0.1944
Drug responses associated with SETD1B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPGAPAVDSLGM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPS6
Histone-lysine N-methyltransferase SETD1B
DEG_ODPH_VHL_1
1218:1230
LAPGAPAVDSLGM
VHL
0.5807
More...