DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
LAPGGGMQAQVGM
Uniprot ID:
P33240
Source protein:
Cleavage stimulation factor subunit 2
Source gene:
CSTF2
Class:
DEG_ODPH_VHL_1
Location:
272:284
E3 ligase:
VHL
DEGRON score:
0.9641
ASA_SCORE:
70.7231
COIL:
0.8898
CONS_SCORE:
0.3694
DSS_SCORE:
0.664
HELIX:
0.0642
FCONS_SCORE:
0.9944
RIG_SCORE:
0.5875
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R294W
TCGA-61-1900
OV
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.R294W
TCGA-AN-A0XL
BRCA
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.R294W
DO2395
BRCA
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.R294W
DO32297
OV
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.G268D
TCGA-AX-A0J1
UCEC
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2222
p.G268D
DO41199
UCEC
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2222
p.G268V
TCGA-AX-A2HD
UCEC
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2222
p.G268V
DO42608
UCEC
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2222
p.G275E
TCGA-D1-A17Q
UCEC
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.6087
p.G275E
DO41903
UCEC
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.6087
p.G286E
TCGA-Z2-A8RT
SKCM
TCGA
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2778
p.G286E
DO51301
SKCM
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.2778
p.P274S
DO222710
MELA
ICGC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.6752
p.R294L
SIDM00727
Non-Small Cell Lung Carcinoma
GDSC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.R294L
ACH-000951
Lung Cancer
CCLE
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
p.R294L
NCI-H2342
lung
COSMIC
LAPGGGMQAQVGM
DEG_ODPH_VHL_1
0.0556
Drug responses associated with CSTF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPGGGMQAQVGM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P33240
Cleavage stimulation factor subunit 2
DEG_ODPH_VHL_1
272:284
LAPGGGMQAQVGM
VHL
0.9641
More...