DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LAPGPFSHLSFSL
Uniprot ID:
Q5VWP3
Source protein:
Muscular LMNA-interacting protein
Source gene:
MLIP
Class:
DEG_ODPH_VHL_1
Location:
409:421
E3 ligase:
VHL
DEGRON score:
0.5782
ASA_SCORE:
65.1077
COIL:
0.7601
CONS_SCORE:
0.5556
DSS_SCORE:
0.3267
HELIX:
0.1205
FCONS_SCORE:
1.1465
RIG_SCORE:
0.6855
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S404L
TCGA-04-1336
OV
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1944
p.P400Q
TCGA-49-AAR2
LUAD
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.0833
p.Q401E
TCGA-61-2104
OV
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1111
p.S428Y
TCGA-AA-3510
COAD
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1389
p.E426D
TCGA-AG-A002
READ
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1944
p.E426D
TCGA-EY-A1GI
UCEC
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1944
p.P413L
TCGA-D3-A2JF
SKCM
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6471
p.H429Y
TCGA-D3-A8GI
SKCM
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1111
p.L403F
TCGA-EE-A2GJ
SKCM
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1667
p.L403F
ACH-000768
Breast Cancer
CCLE
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1667
p.L403F
MDA-MB-231
breast
COSMIC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1667
p.H416Q
TCGA-FI-A2D5
UCEC
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.647
p.G412R
TCGA-IB-7651
PAAD
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6457
p.T402I
TCGA-OR-A5JP
ACC
TCGA
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1389
p.Q417E
DO225215
BRCA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6744
p.Q417E
DO227836
BRCA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6744
p.A404S
DO228952
LICA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.1944
p.S421F
DO222542
MELA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.7982
p.S424F
DO222868
MELA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
p.S424F
ACH-001982
Metastasis
CCLE
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
p.P414S
DO229459
SKCA
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6752
p.R418I
DO50076
UCEC
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.8102
p.F420L
DO43049
UCEC
ICGC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.6981
p.E424K
ACH-000835
Sarcoma
CCLE
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
p.E424K
GCT
soft_tissue
COSMIC
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
p.L406V
ACH-001393
Breast Cancer
CCLE
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
p.L406R
ACH-001959
Bile Duct Cancer
CCLE
LAPGPFSHLSFSL
DEG_ODPH_VHL_1
0.25
Drug responses associated with MLIP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPGPFSHLSFSL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VWP3
Muscular LMNA-interacting protein
DEG_ODPH_VHL_1
409:421
LAPGPFSHLSFSL
VHL
0.5782
More...