DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPHPD
Uniprot ID:
Q9H9J4
Source protein:
Ubiquitin carboxyl-terminal hydrolase 42
Source gene:
USP42
Class:
LIG_APCC_ABBA_1
Location:
1125:1130
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9207
ASA_SCORE:
88.8833
COIL:
0.8727
CONS_SCORE:
0.2381
DSS_SCORE:
0.6862
HELIX:
0.1027
FCONS_SCORE:
1.0274
RIG_SCORE:
0.5843
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D1130G
TCGA-AD-5900
COAD
TCGA
LAPHPD
LIG_APCC_ABBA_1
0.7198
p.D1130G
DO8514
COAD
ICGC
LAPHPD
LIG_APCC_ABBA_1
0.7198
p.R1136I
TCGA-AP-A059
UCEC
TCGA
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.R1136I
DO41361
UCEC
ICGC
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.R1131C
TCGA-AY-6197
COAD
TCGA
LAPHPD
LIG_APCC_ABBA_1
0.3056
p.R1131C
DO9956
COAD
ICGC
LAPHPD
LIG_APCC_ABBA_1
0.3056
p.A1119T
DO228308
MALY
ICGC
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.A1121T
SIDM02049
Pancreatic Carcinoma
GDSC
LAPHPD
LIG_APCC_ABBA_1
0.2222
p.V1140L
SIDM00598
Squamous Cell Lung Carcinoma
GDSC
LAPHPD
LIG_APCC_ABBA_1
0.0556
p.V1140L
ACH-000843
Lung Cancer
CCLE
LAPHPD
LIG_APCC_ABBA_1
0.0556
p.V1140L
HARA
lung
COSMIC
LAPHPD
LIG_APCC_ABBA_1
0.0556
p.R1136K
SIDM00350
Head and Neck Carcinoma
GDSC
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.R1136K
ACH-001641
Head and Neck Cancer
CCLE
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.R1136K
SAT
upper_aerodigestive_tract
COSMIC
LAPHPD
LIG_APCC_ABBA_1
0.1667
p.A1124T
SIDM00014
Colorectal Carcinoma
GDSC
LAPHPD
LIG_APCC_ABBA_1
0.3056
p.A1124T
LIM1215
large_intestine
COSMIC
LAPHPD
LIG_APCC_ABBA_1
0.3056
p.T1137N
SIDM00958
Chronic Myelogenous Leukemia
GDSC
LAPHPD
LIG_APCC_ABBA_1
0.1389
p.T1137N
ACH-000920
Leukemia
CCLE
LAPHPD
LIG_APCC_ABBA_1
0.1389
p.T1137N
CML-T1
haematopoietic_and_lymphoid_tissue
COSMIC
LAPHPD
LIG_APCC_ABBA_1
0.1389
p.V1140I
CW-2
large_intestine
COSMIC
LAPHPD
LIG_APCC_ABBA_1
0.0556
Drug responses associated with USP42 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPHPD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H9J4
Ubiquitin carboxyl-terminal hydrolase 42
LIG_APCC_ABBA_1
1125:1130
LAPHPD
APC,CDC20,FZR1
0.9207
More...