DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPKGVNVRIAV
Uniprot ID:
Q8IV08
Source protein:
5'-3' exonuclease PLD3
Source gene:
PLD3
Class:
DEG_ODPH_VHL_1
Location:
154:165
E3 ligase:
VHL
DEGRON score:
0.6347
ASA_SCORE:
28.6333
COIL:
0.2812
CONS_SCORE:
0.6044
DSS_SCORE:
0.4562
HELIX:
0.1047
FCONS_SCORE:
1.2615
RIG_SCORE:
0.7393
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P168R
TCGA-2Y-A9H1
LIHC
TCGA
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.25
p.P168R
DO219521
LIHC
ICGC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.25
p.R162C
TCGA-DC-6154
READ
TCGA
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.719
p.R162C
DO227569
PBCA
ICGC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.719
p.R162C
DO36523
READ
ICGC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.719
p.R162C
SIDM01313
Colorectal Carcinoma
GDSC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.719
p.Q150H
DO228986
LICA
ICGC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.2222
p.Q150H
DO229045
LICA
ICGC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.2222
p.G144A
SIDM00545
Melanoma
GDSC
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.0556
p.R162H
ACH-001707
Leukemia
CCLE
LAPKGVNVRIAV
DEG_ODPH_VHL_1
0.7133
Drug responses associated with PLD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPKGVNVRIAV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IV08
5'-3' exonuclease PLD3
DEG_ODPH_VHL_1
154:165
LAPKGVNVRIAV
VHL
0.6347
More...