DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPKKKPRKSSMPV
Uniprot ID:
Q6ZN30
Source protein:
Zinc finger protein basonuclin-2
Source gene:
BNC2
Class:
DEG_ODPH_VHL_1
Location:
627:640
E3 ligase:
VHL
DEGRON score:
0.9605
ASA_SCORE:
110.6429
COIL:
0.8906
CONS_SCORE:
0.6395
DSS_SCORE:
0.6254
HELIX:
0.0755
FCONS_SCORE:
1.7046
RIG_SCORE:
0.6452
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.H621L
TCGA-86-8073
LUAD
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.1667
p.P623S
TCGA-AP-A059
UCEC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2222
p.P623S
DO229039
LICA
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2222
p.K630N
TCGA-CA-6718
COAD
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.5806
p.K630M
TCGA-CV-5442
HNSC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.6951
p.A650V
TCGA-D1-A17Q
UCEC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0556
p.P639S
TCGA-EE-A3AF
SKCM
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.5641
p.A650T
TCGA-EO-A22U
UCEC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0556
p.H621Y
TCGA-G3-A25T
LIHC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.1667
p.M618K
TCGA-PK-A5HB
ACC
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0833
p.M618K
SIDM00749
Non-Small Cell Lung Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0833
p.M618K
ACH-000916
Lung Cancer
CCLE
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0833
p.M618K
NCI-H1573
lung
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0833
p.P623A
TCGA-VQ-AA6B
STAD
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2222
p.M617I
TCGA-ZG-A9N3
PRAD
TCGA
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0556
p.G639R
DO218684
BRCA
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7568
p.R625Q
DO225209
BRCA
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2778
p.S642F
DO50090
COAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2778
p.S634L
DO7801
COAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO36881
READ
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO37429
SKCM
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO51766
STAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO51751
STAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO43041
UCEC
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.S634L
DO42713
UCEC
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7667
p.E632Q
DO15791
HNSC
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.6744
p.S642C
DO52106
HNSC
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2778
p.S631F
DO222662
MELA
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7982
p.E632V
DO50085
OV
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7693
p.E640K
DO51720
PAAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7022
p.P636T
DO220011
SARC
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7031
p.E632G
DO38400
STAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7199
p.E622K
DO48009
STAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.1944
p.R625W
DO47867
STAD
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2778
p.G639C
DO39088
THCA
ICGC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.76
p.I646F
SIDM00683
Prostate Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.1667
p.A628E
SIDM01151
Hepatocellular Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7701
p.A628E
ACH-000483
Liver Cancer
CCLE
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7701
p.A628E
SNU-182
liver
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7701
p.P623H
SIDM01117
Small Cell Lung Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2222
p.P623H
SIDM01409
Bladder Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2222
p.V640L
SIDM00633
Breast Carcinoma
GDSC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.5654
p.V640L
ACH-000759
Breast Cancer
CCLE
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.5654
p.V640L
MDA-MB-175-VII
breast
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.5654
p.R631W
SNU-1040
large_intestine
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.8634
p.D642E
KP-2
pancreas
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.2778
p.Y617H
SNU-283
large_intestine
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.0556
p.R640G
TGBC11TKB
stomach
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.7568
p.S634P
639-V
urinary_tract
COSMIC
LAPKKKPRKSSMPV
DEG_ODPH_VHL_1
0.6752
Drug responses associated with BNC2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPKKKPRKSSMPV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6ZN30
Zinc finger protein basonuclin-2
DEG_ODPH_VHL_1
627:640
LAPKKKPRKSSMPV
VHL
0.9605
More...