DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPLFNEKATLLL
Uniprot ID:
Q96SN8
Source protein:
CDK5 regulatory subunit-associated protein 2
Source gene:
CDK5RAP2
Class:
DEG_ODPH_VHL_1
Location:
777:789
E3 ligase:
VHL
DEGRON score:
0.5775
ASA_SCORE:
92.8538
COIL:
0.174
CONS_SCORE:
0.4222
DSS_SCORE:
0.0425
HELIX:
0.8202
FCONS_SCORE:
1.2382
RIG_SCORE:
0.875
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E790D
TCGA-AX-A05Z
UCEC
TCGA
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.3056
p.E790D
DO40884
UCEC
ICGC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.3056
p.C767Y
DO232761
PBCA
ICGC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.0556
p.F773L
SIDM01007
T-Lymphoblastic Leukemia
GDSC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.2222
p.F773L
ACH-002256
Leukemia
CCLE
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.2222
p.F773L
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.2222
p.S791Y
SIDM00438
B-Lymphoblastic Leukemia
GDSC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.7222
p.S791Y
ACH-002275
Leukemia
CCLE
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.7222
p.S791Y
MN-60
haematopoietic_and_lymphoid_tissue
COSMIC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.7222
p.F773S
ACH-001610
Brain Cancer
CCLE
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.2222
p.T799S
SW837
large_intestine
COSMIC
LAPLFNEKATLLL
DEG_ODPH_VHL_1
0.0556
Drug responses associated with CDK5RAP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPLFNEKATLLL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96SN8
CDK5 regulatory subunit-associated protein 2
DEG_ODPH_VHL_1
777:789
LAPLFNEKATLLL
VHL
0.5775
More...