DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPLVPPPTLLV
Uniprot ID:
A7XYQ1
Source protein:
Sine oculis-binding protein homolog
Source gene:
SOBP
Class:
DEG_ODPH_VHL_1
Location:
514:525
E3 ligase:
VHL
DEGRON score:
0.9778
ASA_SCORE:
82.0833
COIL:
0.9353
CONS_SCORE:
0.7059
DSS_SCORE:
0.0666
HELIX:
0.0168
FCONS_SCORE:
1.2099
RIG_SCORE:
0.7431
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A515V
TCGA-A5-A2K7
UCEC
TCGA
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.6936
p.A515V
TCGA-AP-A1DV
UCEC
TCGA
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.6936
p.A515V
DO43186
UCEC
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.6936
p.A515V
DO41271
UCEC
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.6936
p.P526S
TCGA-CG-4460
STAD
TCGA
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.3056
p.P526S
DO38427
STAD
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.3056
p.P521S
TCGA-EE-A2MR
SKCM
TCGA
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.5641
p.P521S
DO37819
SKCM
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.5641
p.V529L
DO228948
LICA
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.2222
p.P504T
DO232224
PBCA
ICGC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.0556
p.P534L
SIDM00789
Colorectal Carcinoma
GDSC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.0833
p.P534L
ACH-000997
Colon/Colorectal Cancer
CCLE
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.0833
p.P534L
HCT-15
large_intestine
COSMIC
LAPLVPPPTLLV
DEG_ODPH_VHL_1
0.0833
Drug responses associated with SOBP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPLVPPPTLLV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A7XYQ1
Sine oculis-binding protein homolog
DEG_ODPH_VHL_1
514:525
LAPLVPPPTLLV
VHL
0.9778
More...