DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPPAMKFSRSLSV
Uniprot ID:
Q9Y566
Source protein:
SH3 and multiple ankyrin repeat domains protein 1
Source gene:
SHANK1
Class:
DEG_ODPH_VHL_1
Location:
901:914
E3 ligase:
VHL
DEGRON score:
0.983
ASA_SCORE:
87.7643
COIL:
0.9115
CONS_SCORE:
0.3165
DSS_SCORE:
0.5715
HELIX:
0.0549
FCONS_SCORE:
0.9664
RIG_SCORE:
0.655
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R898I
TCGA-77-A5GH
LUSC
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.25
p.R898I
DO45452
LUSC
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.25
p.S917L
TCGA-AP-A1DV
UCEC
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.25
p.S917L
DO43186
UCEC
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.25
p.K907T
TCGA-BS-A0UV
UCEC
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.6195
p.M906I
TCGA-DO-A2HM
THCA
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.6507
p.M906I
DO40616
THCA
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.6507
p.G892V
TCGA-NJ-A4YI
LUAD
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.0833
p.P904S
TCGA-Z2-A8RT
SKCM
TCGA
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.5641
p.P904S
DO51301
SKCM
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.5641
p.A893E
DO229032
LICA
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.1111
p.P899T
DO229035
LICA
ICGC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.2778
p.P899L
SIDM00608
Plasma Cell Myeloma
GDSC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.2778
p.P914S
SNU-1040
large_intestine
COSMIC
LAPPAMKFSRSLSV
DEG_ODPH_VHL_1
0.6752
Drug responses associated with SHANK1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPPAMKFSRSLSV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y566
SH3 and multiple ankyrin repeat domains protein 1
DEG_ODPH_VHL_1
901:914
LAPPAMKFSRSLSV
VHL
0.983
More...